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terrimporter authored Oct 15, 2018
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Expand Up @@ -14,13 +14,27 @@ Wang et al. (2007) Naïve Bayesian classifier for rapid assignment of rRNA seque

# Releases

### v3.1
### v3.2

This version was updated to include some invasives species of interest even though their sequences are less than 500bp in length.

The latest release can be downloaded from here:
https://github.com/terrimporter/CO1Classifier/releases/tag/v3.2
The CO1v3_2_trained.tar.gz file should be decompressed and used directly with the RDP Classifier to make taxonomic assignments to the species rank.

The reference files for the latest release can be downloaded from here:
https://github.com/terrimporter/CO1Classifier/releases/tag/v3.2-ref
The CO1v3_2_training.tar.gz file should be cecompressed. The folder contains the original taxonomy and fasta files that are included here for reference only. They are the same as the v3 files except that a few bacterial outgroup sequences that were misannotated as bacteriophage viruses were removed.

The v3 MINIMUM bootstrap cutoff values should be used with this version of the CO1 classifier.

### v3.1

The v3.1 release can be downloaded from here:
https://github.com/terrimporter/CO1Classifier/releases/tag/v3.1
The CO1v3_1_trained.tar.gz file should be decompressed and used directly with the RDP Classifier to make taxonomic assignments to the species rank.

The reference files for the latest release can be downloaded from here:
The reference files for the v3.1 release can be downloaded from here:
https://github.com/terrimporter/CO1Classifier/releases/tag/v3.1-ref
The CO1v3_1_training.tar.gz file should be cecompressed. The folder contains the original taxonomy and fasta files that are included here for reference only. They are the same as the v3 files except that a few bacterial outgroup sequences that were misannotated as bacteriophage viruses were removed.

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