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Allow multiple executables to be built at once #174

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45 changes: 0 additions & 45 deletions configure.ac
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Original file line number Diff line number Diff line change
Expand Up @@ -117,52 +117,28 @@ AM_CONDITIONAL([WANT_WIN], [test "$enable_win" = yes])

AC_ARG_ENABLE([phytime],[AS_HELP_STRING([--enable-phytime],[Compile PhyTime])],[phytime=yes],[phytime=no])
AM_CONDITIONAL([WANT_PHYTIME], [test "$phytime" = yes])
if test "$phytime" = yes; then
AC_DEFINE([PHYTIME],[1],[PHYTIME tag on])
fi

AC_ARG_ENABLE([phyml],[AS_HELP_STRING([--enable-phyml],[Compile PhyML])],[phyml=yes],[phyml=no])
AM_CONDITIONAL([WANT_PHYML], [test "$phyml" = yes])
if test "$phyml" = yes; then
AC_DEFINE([PHYML],[1],[PHYML tag on])
fi


AC_ARG_ENABLE([rwrap],[AS_HELP_STRING([--enable-rwrap],[Compile Rwrap])],[rwrap=yes],[rwrap=no])
AM_CONDITIONAL([WANT_RWRAP], [test "$rwrap" = yes])
if test "$rwrap" = yes; then
AC_DEFINE([RWRAP],[1],[RWRAP tag on])
fi

AC_ARG_ENABLE([rf],[AS_HELP_STRING([--enable-rf],[Compile RF])],[rf=yes],[rf=no])
AM_CONDITIONAL([WANT_RF], [test "$rf" = yes])
if test "$rf" = yes; then
AC_DEFINE([RF],[1],[RF tag on])
fi

AC_ARG_ENABLE([test],[AS_HELP_STRING([--enable-test],[Compile test])],[test=yes],[test=no])
AM_CONDITIONAL([WANT_TEST], [test "$test" = yes])
if test "$test" = yes; then
AC_DEFINE([TEST],[1],[TEST tag on])
fi

AC_ARG_ENABLE([evolve],[AS_HELP_STRING([--enable-evolve],[Compile evolve])],[evolve=yes],[evolve=no])
AM_CONDITIONAL([WANT_EVOLVE], [test "$evolve" = yes])
if test "$evolve" = yes; then
AC_DEFINE([EVOLVE],[1],[EVOLVE tag on])
fi

AC_ARG_ENABLE([phyrex],[AS_HELP_STRING([--enable-phyrex],[Compile phyrex])],[phyrex=yes],[phyrex=no])
AM_CONDITIONAL([WANT_PHYREX], [test "$phyrex" = yes])
if test "$phyrex" = yes; then
AC_DEFINE([PHYREX],[1],[PHYREX tag on])
fi

AC_ARG_ENABLE([phyrexsim],[AS_HELP_STRING([--enable-phyrexsim],[Compile phyrexsim])],[phyrexsim=yes],[phyrexsim=no])
AM_CONDITIONAL([WANT_PHYREXSIM], [test "$phyrexsim" = yes])
if test "$phyrexsim" = yes; then
AC_DEFINE([PHYREXSIM],[1],[PHYREXSIM tag on])
fi

dnl AS_IF([test "x$enable_phyrex" = "xyes"],[PKG_CHECK_MODULES([GTK], [gtk+-3.0])])
dnl AS_IF([test "x$enable_phyrex" = "xyes"],[PKG_CHECK_MODULES([CAIRO], [cairo])])
Expand All @@ -173,27 +149,6 @@ dnl AM_PATH_GTK_3_0(,,AC_MSG_ERROR(windoe-default needs GTK+-3))

AC_ARG_ENABLE([date],[AS_HELP_STRING([--enable-date],[Compile date])],[date=yes],[date=no])
AM_CONDITIONAL([WANT_DATE], [test "$date" = yes])
if test "$date" = yes; then
AC_DEFINE([DATE],[1],[DATE tag on])
fi

if test "$phytime" = no; then
if test "$rwrap" = no; then
if test "$test" = no; then
if test "$rf" = no; then
if test "$evolve" = no; then
if test "$phyrex" = no; then
if test "$phyrexsim" = no; then
if test "$date" = no; then
AC_DEFINE([PHYML],[1],[PHYML tag on])
fi
fi
fi
fi
fi
fi
fi
fi

AC_CONFIG_FILES([Makefile src/Makefile doc/Makefile])
AC_OUTPUT
109 changes: 38 additions & 71 deletions src/Makefile.am
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Original file line number Diff line number Diff line change
Expand Up @@ -2,58 +2,36 @@


DEFS = $(REVISION)

bin_PROGRAMS =
if WANT_PHYML
bin_PROGRAMS = phyml
PROG = PHYML
else
if WANT_PHYTIME
bin_PROGRAMS = phytime
PROG = PHYTIME
else
if WANT_RF
bin_PROGRAMS = rf
PROG = RF
else
if WANT_MPI
bin_PROGRAMS = phyml-mpi
PROG = PHYML
else
if WANT_WIN
bin_PROGRAMS = phyml-windows
PROG = PHYML
else
if WANT_TEST
bin_PROGRAMS = test
PROG = TEST
else
if WANT_EVOLVE
bin_PROGRAMS = evolve
PROG = EVOLVE
else
if WANT_PHYREX
bin_PROGRAMS = phyrex
PROG = PHYREX
else
if WANT_PHYREXSIM
bin_PROGRAMS = phyrexsim
PROG = PHYREXSIM
else
if WANT_DATE
bin_PROGRAMS = date
PROG = DATE
else
bin_PROGRAMS = phyml
PROG = PHYML
bin_PROGRAMS += phyml
endif
if WANT_PHYTIME
bin_PROGRAMS += phytime
endif
if WANT_RF
bin_PROGRAMS += rf
endif
if WANT_MPI
bin_PROGRAMS += phyml-mpi
endif
if WANT_WIN
bin_PROGRAMS += phyml-windows
endif
if WANT_TEST
bin_PROGRAMS += test
endif
if WANT_EVOLVE
bin_PROGRAMS += evolve
endif
if WANT_PHYREX
bin_PROGRAMS += phyrex
endif
if WANT_PHYREXSIM
bin_PROGRAMS += phyrexsim
endif
if WANT_DATE
bin_PROGRAMS += date
endif


Expand Down Expand Up @@ -90,8 +68,8 @@ sse.c sse.h\
avx.c avx.h\
ancestral.c ancestral.h\
xml.c xml.h
phytime_LDADD = -lm
else
phytime_CFLAGS = -DPHYTIME $(AM_CFLAGS)
endif
# if WANT_RWRAP
# lib_LTLIBRARIES = librwrap.la
# librwrap_la_SOURCES = main.c \
Expand Down Expand Up @@ -123,7 +101,6 @@ else
# xml.c xml.h\
# mixt.c mixt.h\
# rwrapper.c rwrapper.h
# librwrap_la_LIBADD = -lm
# librwrap_la_LDFLAGS = -I/usr/share/R/include -shared -module -flat_namespace
# librwrap_la_CFLAGS=-std=gnu99 -fPIC -Wl,-z,defs
# else
Expand Down Expand Up @@ -156,8 +133,8 @@ tbe.c tbe.h \
ancestral.c ancestral.h\
sse.c sse.h\
avx.c avx.h
rf_LDADD = -lm
else
rf_CFLAGS = -DRF $(AM_CFLAGS)
endif
if WANT_MPI
phyml_mpi_SOURCES = main.c \
utilities.c utilities.h\
Expand Down Expand Up @@ -187,8 +164,8 @@ sse.c sse.h\
avx.c avx.h\
ancestral.c ancestral.h\
mpi_boot.c mpi_boot.h
phyml_mpi_LDADD = -lm
else
phyml_mpi_CFLAGS = -DPHYML $(AM_CFLAGS)
endif
if WANT_WIN
phyml_windows_SOURCES = main.c \
utilities.c utilities.h\
Expand Down Expand Up @@ -222,8 +199,7 @@ sse.c sse.h\
avx.c avx.h\
ancestral.c ancestral.h\
date.c date.h
phyml_windows_LDADD = -lm
else
endif
if WANT_TEST
test_SOURCES = main.c \
utilities.c utilities.h\
Expand Down Expand Up @@ -257,8 +233,8 @@ sse.c sse.h\
avx.c avx.h\
ancestral.c ancestral.h\
date.c date.h
test_LDADD = -lm
else
test_CFLAGS = -DTEST $(AM_CFLAGS)
endif
if WANT_EVOLVE
evolve_SOURCES = main.c\
utilities.c utilities.h\
Expand Down Expand Up @@ -288,8 +264,8 @@ nexus.c nexus.h\
init.c init.h\
xml.c xml.h\
mixt.c mixt.h
evolve_LDADD = -lm
else
evolve_CFLAGS = -DEVOLVE $(AM_CFLAGS)
endif
if WANT_PHYREX
phyrex_SOURCES = main.c\
utilities.c utilities.h\
Expand Down Expand Up @@ -328,8 +304,8 @@ slfv.c slfv.h\
rw.c rw.h\
rrw.c rrw.h\
ibm.c ibm.h
phyrex_LDADD = -lm
else
phyrex_CFLAGS = -DPHYREX $(AM_CFLAGS)
endif
if WANT_PHYREXSIM
phyrexsim_SOURCES = main.c\
utilities.c utilities.h\
Expand Down Expand Up @@ -364,8 +340,8 @@ sse.c sse.h\
avx.c avx.h\
ancestral.c ancestral.h\
phyrex.c phyrex.h
phyrexsim_LDADD = -lm
else
phyrexsim_CFLAGS = -DPHYREXSIM $(AM_CFLAGS)
endif
if WANT_DATE
date_SOURCES = main.c \
utilities.c utilities.h\
Expand Down Expand Up @@ -396,8 +372,8 @@ xml.c xml.h\
tbe.c tbe.h \
mixt.c mixt.h\
date.c date.h
date_LDADD = -lm
else
date_CFLAGS = -DDATE $(AM_CFLAGS)
endif
phyml_SOURCES = main.c \
utilities.c utilities.h\
optimiz.c optimiz.h\
Expand Down Expand Up @@ -425,16 +401,7 @@ avx.c avx.h\
tbe.c tbe.h \
ancestral.c ancestral.h \
mixt.c mixt.h
phyml_LDADD = -lm
endif
endif
endif
endif
endif
endif
endif
endif
endif
phyml_CFLAGS = -DPHYML $(AM_CFLAGS)


all-am: intro $(bin_PROGRAMS)
Expand Down