fmt

snakemake · Nov 26, 2024 · 40f846a · 40f846a
1 parent b810024
commit 40f846a
Showing 1 changed file with 8 additions and 2 deletions.
diff --git a/meta/bio/varscan2_snpeff/test/Snakefile b/meta/bio/varscan2_snpeff/test/Snakefile
@@ -12,7 +12,10 @@ rule get_genome_fasta:
 
 rule samtools_mpileup:
     input:
-        bam=expand("{sample}.sorted.bam", sample=("a", "b"),),
+        bam=expand(
+            "{sample}.sorted.bam",
+            sample=("a", "b"),
+        ),
         reference_genome="genome.fasta",
     output:
         "samtools/mpileup.gz",
@@ -24,6 +27,7 @@ rule samtools_mpileup:
     wrapper:
         "master/bio/samtools/mpileup"
 
+
 rule varscan2_somatic:
     input:
         mpileup="samtools/mpileup.gz",
@@ -38,9 +42,10 @@ rule varscan2_somatic:
     wrapper:
         "master/bio/varscan/somatic"
 
+
 rule snpeff_download:
     output:
-        directory("resources/snpeff/R64-1-1.105")
+        directory("resources/snpeff/R64-1-1.105"),
     threads: 1
     log:
         "logs/snpeff_download.log",
@@ -49,6 +54,7 @@ rule snpeff_download:
     wrapper:
         "master/bio/snpeff/download"
 
+
 rule snpeff_annotate:
     input:
         calls="varscan2/snp.vcf",