[Backport release-1.16] Fix python 3.13 compatibility

[johnkerl]

Issue and/or context: Backports #3728 manually since backport bot is having a bad day.

Changes:

Notes for Reviewer:

[codecov]

Codecov Report

Attention: Patch coverage is 50.00000% with 6 lines in your changes missing coverage. Please review.

Project coverage is 89.17%. Comparing base (1f12399) to head (1d31edf).
Report is 1 commits behind head on release-1.16.

Additional details and impacted files

@@               Coverage Diff                @@
##           release-1.16    #3761      +/-   ##
================================================
- Coverage         89.19%   89.17%   -0.03%     
================================================
  Files                54       54              
  Lines              6416     6419       +3     
================================================
+ Hits               5723     5724       +1     
- Misses              693      695       +2     

Flag	Coverage Δ
python	89.17% <50.00%> (-0.03%)	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

Components	Coverage Δ
python_api	89.17% <50.00%> (-0.03%)	⬇️
libtiledbsoma	∅ <ø> (∅)

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