0.6.3 release

sigven · Dec 3, 2021 · e897c7d · e897c7d
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: oncoPharmaDB
 Type: Package
 Title: Dataset with targeted and non-targeted anticancer drugs
-Version: 0.6.2
-Date: 2021-11-25
+Version: 0.6.3
+Date: 2021-12-03
 Authors@R: 
     c(person(given = "Sigve",
              family = "Nakken",

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,7 @@
+# Version 0.6.3 (December 3rd 2021)
+
+* Data update: NCI Thesaurus (21.11e)
+
 # Version 0.6.2 (November 25th 2021)
 
 * Data update: Open Targets Platform (2021.11)

diff --git a/R/data.R b/R/data.R
@@ -4,7 +4,7 @@
 #' data has been harvested from the Open Targets Platform, the NCI Thesaurus, and ChEMBL. Note that each entry corresponds
 #' to a "drug synonym-target-indication association"
 #'
-#' @format \bold{oncopharmadb} - A data frame with 418,620 rows and 49 columns:
+#' @format \bold{oncopharmadb} - A data frame with 427,034 rows and 49 columns:
 #' \itemize{
 #'   \item \emph{drug_name} - Primary drug name (upper case, NCI Thesaurus)
 #'   \item \emph{nci_concept_display_name} - Primary drug name (NCI Thesaurus)
@@ -36,7 +36,7 @@
 #'   \item \emph{nci_version} - version of NCI used for this version of oncoPharmaDB
 #'   \item \emph{chembl_version} - version of ChEMBL used for this version of oncoPharmaDB
 #'   \item \emph{opentargets_version} - version of Open Target Platform used for this version of oncoPharmaDB
-#'   \item \emph{comb_regimen_indication} - type of drug molecule (Antibody, small molecule etc)
+#'   \item \emph{comb_regimen_indication} - logical for whether use of drug in a given condition is in the context of a drug combination
 #'   \item \emph{immune_checkpoint_inhibitor} - logical indicating if drug is an immune checkpoint inhibitor
 #'   \item \emph{topoisomerase_inhibitor} - logical indicating if drug is a topoisomerase inhibitor
 #'   \item \emph{tubulin_inhibitor} - logical indicating if drug is a tubulin inhibitor
@@ -64,7 +64,7 @@
 
 #' Dataset of drug synonyms - linking known drug aliases to a primary identifier
 #'
-#' @format \bold{oncopharma_synonyms} - A data frame with 9,946 rows and 52 columns:
+#' @format \bold{oncopharma_synonyms} - A data frame with 151,796 rows and 3 columns:
 #' \itemize{
 #'   \item \emph{alias} - drug alias
 #'   \item \emph{nci_concept_display_name} - Primary drug name (NCI Thesaurus)

diff --git a/README.md b/README.md
@@ -24,12 +24,12 @@ Anti-cancer drugs are currently provided with the following tentative drug categ
 * Topoisomerase inhibitors
 * Tubulin inhibitors
 
-Currently (as of November 25th 2021), `oncoPharmaDB` is built upon the following 
+Currently (as of December 2nd 2021), `oncoPharmaDB` is built upon the following 
 releases of external databases:
 
  - Open Targets Platform (2021.11)
  - ChEMBL (v29)
- - NCI Thesaurus (21.10d)
+ - NCI Thesaurus (21.11e)
 
 
 #### Installation & Usage

diff --git a/data/oncopharma_synonyms.rda b/data/oncopharma_synonyms.rda
diff --git a/data/oncopharmadb.rda b/data/oncopharmadb.rda
diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/CODE_OF_CONDUCT.html b/docs/CODE_OF_CONDUCT.html
diff --git a/docs/LICENSE-text.html b/docs/LICENSE-text.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.14.0.3
 pkgdown: 1.6.1
 pkgdown_sha: ~
 articles: {}
-last_built: 2021-11-25T19:09Z
+last_built: 2021-12-03T08:52Z
 
diff --git a/docs/reference/get_onco_drugs.html b/docs/reference/get_onco_drugs.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/oncopharma_synonyms.html b/docs/reference/oncopharma_synonyms.html
diff --git a/docs/reference/oncopharmadb.html b/docs/reference/oncopharmadb.html
diff --git a/docs/reference/pipe.html b/docs/reference/pipe.html
diff --git a/docs/reference/tidyeval.html b/docs/reference/tidyeval.html
diff --git a/man/oncopharma_synonyms.Rd b/man/oncopharma_synonyms.Rd
diff --git a/man/oncopharmadb.Rd b/man/oncopharmadb.Rd