Code

Sept 2024 release#251

Code

Merged

sigven merged 16 commits intomainsigven/pcgr:mainfrom cnaplot_patchsigven/pcgr:cnaplot_patchCopy head branch name to clipboardSep 29, 2024

+2,684-981

Commits

Commits on Aug 14, 2024

• fix chromosome format in filter_maf

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  c8a431f

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• new cna segment plot function

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Commits on Sep 29, 2024

• updated mane and hgvsc transcript annotations

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• support no HTML and filtered TSV output

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• updated man pages

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• expr fix, germline support and cna segment viz fix

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• more oncogenic evidence and hotspot bug fix

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  1ddacd3

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• updated docs

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• add kataegis and fix tmb bug

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• add kataegis and expr outliers to excel output

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  7afc7c8

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• updated data formats

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• added coding consequence pie chart

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• support for CPSR input

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  91b7cfd

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• updated HTML templates - msigs, oncogenicity, cna, docs

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  593e822

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• updated funcs in NAMESPACE

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  036fba3

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• update README and CHANGELOG

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