set locale within Dockerfile

Dockerfile

@@ -30,6 +30,10 @@ FROM quay.io/bioconda/base-glibc-busybox-bash:3.1
 
 COPY --from=0 /opt/mambaforge/envs/ /opt/mambaforge/envs/
 
+ENV LANGUAGE='C.UTF-8'
+ENV LANG='C.UTF-8'
+ENV LC_ALL='C.UTF-8'
+
 ARG PCGR_ENV_NAME="pcgr"
 # pcgr env is activated by default
 ENV PATH="/opt/mambaforge/envs/${PCGR_ENV_NAME}/bin:${PATH}"

pcgr/main.py

@@ -131,10 +131,10 @@ def cli():
     optional_other.add_argument("--pcgrr_conda", default="pcgrr", help="pcgrr conda env name (default: %(default)s)")
 
     # Set locale since apptainer on HPC gives warnings
-    locale_to_use = utils.get_locale()
-    os.environ["LC_ALL"] = locale_to_use
-    os.environ["LC"] = locale_to_use
-    os.environ["LANG"] = locale_to_use
+    #locale_to_use = utils.get_locale()
+    #os.environ["LANGUAGE"] = locale_to_use
+    #os.environ["LANG"] = locale_to_use
+    #os.environ["LC_ALL"] = locale_to_use
 
     # Parse required and optional arguments
     args = parser.parse_args()