Agglomerate segments during cutout

seung-lab · May 16, 2024 · babd927 · babd927
1 parent d590234
commit babd927
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/cut_chunk_cs.py b/scripts/cut_chunk_cs.py
@@ -38,7 +38,7 @@ def write_metadata(fn, offset, size, ac_offset, low, high, boundaries):
     aff_cutout = cut_data(aff, start_coord, end_coord, boundary_flags)
     save_raw_data("aff.raw", aff_cutout)
 
-seg = load_data(os.environ['SEG_PATH'], mip=global_param['AFF_RESOLUTION'], fill_missing=global_param.get('SEG_FILL_MISSING', False))
+seg = load_data(os.environ['SEG_PATH'], mip=global_param['AFF_RESOLUTION'], fill_missing=global_param.get('SEG_FILL_MISSING', False), agglomerate=True)
 seg_cutout = cut_data(seg, start_coord, end_coord, boundary_flags)
 save_raw_data("seg.raw", seg_cutout)