Update Pandas, NumPy and SciPy versions

MANIFEST.in

@@ -0,0 +1,2 @@
+include README.rst
+include requirements.txt

README.rst

@@ -120,10 +120,10 @@ Alternatively, you can install the library directly using the source code in Git
 **Required Dependencies:**
 
 
-* Python 3.8
-* numpy==1.23.5
-* scikit-learn>=1.3.0
-* scipy==1.10.0
+* Python 3.9
+* numpy==2.0.2
+* scikit-learn==1.5.2
+* scipy==1.13.1
 * pyod==1.1.0
 * combo==0.1.3
 
@@ -133,7 +133,7 @@ Alternatively, you can install the library directly using the source code in Git
 * rrcf==0.4.3 (Only required for  `pysad.models.robust_random_cut_forest.RobustRandomCutForest`)
 * PyNomaly==0.3.3 (Only required for  `pysad.models.loop.StreamLocalOutlierProbability`)
 * mmh3==2.5.1 (Only required for  `pysad.models.xstream.xStream`)
-* pandas==2.0.3 (Only required for  `pysad.utils.pandas_streamer.PandasStreamer`)
+* pandas==2.2.3 (Only required for  `pysad.utils.pandas_streamer.PandasStreamer`)
 
 Quick Links
 ============
@@ -180,4 +180,4 @@ If you use PySAD for a scientific publication, please cite the following paper:
       author={Yilmaz, Selim F and Kozat, Suleyman S},
       journal={arXiv preprint arXiv:2009.02572},
       year={2020}
-    }
+    }

azure-pipelines.yml

@@ -9,9 +9,6 @@ trigger:
 
 strategy:
   matrix:
-    linux38:
-      imageName: "ubuntu-latest"
-      python.version: '3.8'
     linux39:
       imageName: "ubuntu-latest"
       python.version: '3.9'
@@ -21,6 +18,9 @@ strategy:
     linux311:
       imageName: "ubuntu-latest"
       python.version: '3.11'
+    linux312:
+      imageName: "ubuntu-latest"
+      python.version: '3.12'
 
   maxParallel: 9
 

deploy.sh

@@ -1,4 +1,4 @@
 #!/usr/bin/env bash
 rm -rf ./build/ ./dist/ ./pysad.egg-info/
-python setup.py sdist bdist_wheel
-python3 -m twine upload dist/*
+python3 -m build
+python3 -m twine upload dist/*

docs/api.rst

@@ -169,14 +169,14 @@ Postprocessors
    :template: class.rst
    :toctree: generated
 
-    pysad.transform.postprocessing.AveragePostprocessor
-    pysad.transform.postprocessing.MaxPostprocessor
-    pysad.transform.postprocessing.MedianPostprocessor
-    pysad.transform.postprocessing.ZScorePostprocessor
-    pysad.transform.postprocessing.RunningAveragePostprocessor
-    pysad.transform.postprocessing.RunningMaxPostprocessor
-    pysad.transform.postprocessing.RunningMedianPostprocessor
-    pysad.transform.postprocessing.RunningZScorePostprocessor
+    transform.postprocessing.AveragePostprocessor
+    transform.postprocessing.MaxPostprocessor
+    transform.postprocessing.MedianPostprocessor
+    transform.postprocessing.ZScorePostprocessor
+    transform.postprocessing.RunningAveragePostprocessor
+    transform.postprocessing.RunningMaxPostprocessor
+    transform.postprocessing.RunningMedianPostprocessor
+    transform.postprocessing.RunningZScorePostprocessor
 
 
 Statistics

docs/conf.py

@@ -76,9 +76,8 @@
 
 html_theme_options = {
     'canonical_url': '',
-    'analytics_id': 'UA-XXXXXXX-1',  #  Provided by Google in your dashboard
     'logo_only': True,
-    'display_version': False,
+    'version_selector': False,
     'prev_next_buttons_location': 'bottom',
     'style_external_links': False,
     #'vcs_pageview_mode': '',
@@ -112,3 +111,5 @@
     # 'matplotlib': ('https://matplotlib.org/', None),
     #'sklearn': ('https://scikit-learn.org/stable', None)
 }
+
+bibtex_bibfiles = ['refs.bib']

docs/installation.rst

@@ -23,10 +23,10 @@ Alternatively, you can install the library directly using the source code in Git
 **Required Dependencies:**
 
 
-* Python 3.8
-* numpy==1.23.5
-* scikit-learn>=1.3.0
-* scipy==1.10.0
+* Python 3.9
+* numpy==2.0.2
+* scikit-learn==1.5.2
+* scipy==1.13.1
 * pyod==1.1.0
 * combo==0.1.3
 
@@ -36,4 +36,4 @@ Alternatively, you can install the library directly using the source code in Git
 * rrcf==0.4.3 (Only required for :class:`pysad.models.robust_random_cut_forest.RobustRandomCutForest`)
 * PyNomaly==0.3.3 (Only required for :class:`pysad.models.loop.StreamLocalOutlierProbability`)
 * mmh3==2.5.1 (Only required for :class:`pysad.models.xstream.xStream`)
-* pandas==2.0.3 (Only required for :class:`pysad.utils.pandas_streamer.PandasStreamer`)
+* pandas==2.2.3 (Only required for :class:`pysad.utils.pandas_streamer.PandasStreamer`)

pyproject.toml

@@ -0,0 +1,58 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "pysad"
+version = "0.2.0"
+dependencies = [
+  "numpy",
+  "scikit-learn",
+  "scipy",
+  "pyod==1.1.0",
+  "combo==0.1.3",
+]
+requires-python = ">=3.9"
+authors = [
+  {name = "Selim Firat Yilmaz", email = "[email protected]"},
+]
+maintainers = [
+  {name = "Selim Firat Yilmaz", email = "[email protected]"}
+]
+description = "PySAD is an open-source python framework for anomaly detection on streaming multivariate data."
+readme = "README.rst"
+license = {file = "LICENSE"}
+keywords = ["outlier detection", "anomaly detection", "machine learning"]
+classifiers = [
+        'Development Status :: 2 - Pre-Alpha',
+        'Intended Audience :: Education',
+        'Intended Audience :: Financial and Insurance Industry',
+        'Intended Audience :: Developers',
+        'Intended Audience :: Science/Research',
+        'Intended Audience :: Information Technology',
+        "Topic :: Scientific/Engineering",
+        "Topic :: Scientific/Engineering :: Artificial Intelligence",
+        "Topic :: Software Development",
+        "License :: OSI Approved :: BSD License",
+        'Operating System :: Unix',
+        'Operating System :: MacOS',
+        'Operating System :: Microsoft :: Windows',
+        "Programming Language :: Python :: 3.9",
+        "Programming Language :: Python :: 3.10",
+        "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
+    ]
+
+[project.optional-dependencies]
+rrcf = ["rrcf==0.4.3"]
+slop = ["PyNomaly==0.3.3"]
+xStream = ["mmh3==2.5.1"]
+pandas = ["pandas"]
+
+[project.urls]
+Homepage = "https://github.com/selimfirat/pysad"
+Documentation = "https://pysad.readthedocs.io/"
+Repository = "https://github.com/selimfirat/pysad.git"
+"Bug Tracker" = "https://github.com/selimfirat/pysad/issues"
+Changelog = "https://github.com/selimfirat/pysad/blob/master/CHANGES.txt"
+

pysad/models/kitnet_model/dA.py

@@ -45,8 +45,8 @@ def __init__(self, params):
             self.params.n_hidden = int(numpy.ceil(self.params.n_visible*self.params.hiddenRatio))
 
         # for 0-1 normlaization
-        self.norm_max = numpy.ones((self.params.n_visible,)) * -numpy.Inf
-        self.norm_min = numpy.ones((self.params.n_visible,)) * numpy.Inf
+        self.norm_max = numpy.ones((self.params.n_visible,)) * -numpy.inf
+        self.norm_min = numpy.ones((self.params.n_visible,)) * numpy.inf
         self.n = 0
 
         self.rng = numpy.random.RandomState(1234)

requirements-ci.txt

@@ -1,9 +1,10 @@
-numpy==1.23.5
-scikit-learn>=1.3.0
-scipy==1.10.0
+numpy==2.0.2
+scikit-learn==1.5.2
+scipy==1.13.1
 pyod==1.1.0
-pandas==2.0.3
+pandas==2.2.3
 rrcf==0.4.3
 PyNomaly==0.3.3
 mmh3==2.5.1
-combo==0.1.3
+combo==0.1.3
+setuptools>=49.6.0

requirements-dev.txt

@@ -1,20 +1,20 @@
-sphinx_rtd_theme==0.5.0
-sphinx==6.2.1
+sphinx_rtd_theme==3.0.1
+sphinx==8.1.3
 sphinxcontrib-fulltoc==1.2.0
-pytest==5.2.1
-pytest-cov==2.10.0
-coveralls==2.1.1
-sphinx-copybutton==0.3.0
-sphinxcontrib-bibtex==1.0.0
-numpy==1.23.5
-pandas==2.0.3
-scipy==1.10.0
+pytest==8.3.3
+pytest-cov==6.0.0
+coveralls==4.0.1
+sphinx-copybutton==0.5.2
+sphinxcontrib-bibtex==2.6.3
+numpy==2.0.2
+pandas==2.2.3
+scipy==1.13.1
 pyod==1.1.0
 rrcf==0.4.3
 PyNomaly==0.3.3
 mmh3==2.5.1
-scikit-learn==1.3.0
+scikit-learn==1.5.2
 setuptools>=49.6.0
 wheel>=0.35.1
 twine>=3.2.0
-combo==0.1.3
+combo==0.1.3

requirements.txt

@@ -1,5 +1,5 @@
-numpy==1.23.5
-scikit-learn>=1.3.0
-scipy==1.10.0
+numpy==2.0.2
+scikit-learn==1.5.2
+scipy==1.13.1
 pyod==1.1.0
-combo==0.1.3
+combo==0.1.3

setup.py

@@ -42,10 +42,10 @@
         'Operating System :: Unix',
         'Operating System :: MacOS',
         'Operating System :: Microsoft :: Windows',
-        "Programming Language :: Python :: 3.8",
         "Programming Language :: Python :: 3.9",
         "Programming Language :: Python :: 3.10",
         "Programming Language :: Python :: 3.11",
+        "Programming Language :: Python :: 3.12",
     ],
-    python_requires=">=3.8"
+    python_requires=">=3.9"
 )