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tcrdist draft version implemented#502

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grst merged 33 commits intoscverse:mainscverse/scirpy:mainfrom felixpetschko:tcrdistfelixpetschko/scirpy:tcrdistCopy head branch name to clipboardApr 21, 2024

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Commits on Apr 3, 2024

• tcrdist draft version implemented

  felixpetschko

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• Merge branch 'main' into tcrdist

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Commits on Apr 8, 2024

• tcrdist tests added

  felixpetschko

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• fixed ir_dist _get_distance_calculator parameter handling

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Commits on Apr 10, 2024

• handling of empty input sequences fixed

  felixpetschko

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• additional tests for tcrdist added

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• tcrdist test with comparison against reference implementation added

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• Merge branch 'tcrdist' of https://github.com/felixpetschko/scirpy into tcrdist

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• formatting of tcrdist tests improved

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Commits on Apr 16, 2024

• comments for TCRdist added

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• Merge branch 'tcrdist' of https://github.com/felixpetschko/scirpy into tcrdist

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• code formatting

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Commits on Apr 17, 2024

• Merge branch 'main' into tcrdist

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Commits on Apr 18, 2024

• handling of default values for cutoff and n_jobs in _get_distance_calculator adapted

  felixpetschko

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• auto formatting disabled for tcr_dict_distance_matrix

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• added data type hints to functions and adapted function comments

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• changed testdata import for test cases

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• changed __init__ and _nb_tcrdist_mat in TCRdistDistanceCalculator to keywords only

  felixpetschko

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• keywords only for _nb_tcrdist_mat removed, because it doesn't work with numba

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• Merge branch 'tcrdist' of https://github.com/felixpetschko/scirpy into tcrdist

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• unused control variable changed to _

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Commits on Apr 19, 2024

• creation of numba lookup matrix changed

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• Merge branch 'tcrdist' of https://github.com/felixpetschko/scirpy into tcrdist

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Commits on Apr 21, 2024

• Update CHANGELOG

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• Update docstring

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• Update ir_dist docstring

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• Update description in tutorial

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