chore: add patient tests (#8)

Since we are simulating actual DB calls, we shall be using test containers to handle this. The idea is to run a hapi fhir container (with the latest tag), and run tests against that server. No need for mocking here 😌
savannahghi · Nov 22, 2024 · 502e2a8 · 502e2a8
1 parent c71e697
commit 502e2a8
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diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -0,0 +1,32 @@
+name: build
+on:
+  push:
+    branches:
+      - master
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref }}
+  cancel-in-progress: true
+
+jobs:
+  test-build:
+    name: 👷 Test & Build 
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 3
+      fail-fast: false
+      matrix:
+        goVer: ['1.21', '1.22']
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Go ${{ matrix.goVer }}
+        uses: actions/setup-go@v5
+        with:
+          go-version: ${{ matrix.goVer }}
+
+      - name: Test via ${{ matrix.goVer }}
+        run: |
+          go test -coverprofile cover.out -v -race ./...
+          go tool cover -func=cover.out
diff --git a/.github/workflows/release-please.yml b/.github/workflows/release-please.yml
@@ -21,4 +21,4 @@ jobs:
           token: ${{ secrets.MY_RELEASE_PLEASE_TOKEN }}
           # this is a built-in strategy in release-please, see "Action Inputs"
           # for more options
-          release-type: simple
+          release-type: go
diff --git a/go.mod b/go.mod
@@ -5,6 +5,55 @@ go 1.22.0
 require github.com/savannahghi/scalarutils v0.0.4
 
 require (
+	dario.cat/mergo v1.0.0 // indirect
+	github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1 // indirect
+	github.com/Microsoft/go-winio v0.6.2 // indirect
 	github.com/asaskevich/govalidator v0.0.0-20210307081110-f21760c49a8d // indirect
+	github.com/brianvoe/gofakeit v3.18.0+incompatible // indirect
+	github.com/cenkalti/backoff/v4 v4.2.1 // indirect
+	github.com/containerd/containerd v1.7.18 // indirect
+	github.com/containerd/log v0.1.0 // indirect
+	github.com/containerd/platforms v0.2.1 // indirect
+	github.com/cpuguy83/dockercfg v0.3.2 // indirect
+	github.com/davecgh/go-spew v1.1.1 // indirect
+	github.com/distribution/reference v0.6.0 // indirect
+	github.com/docker/docker v27.1.1+incompatible // indirect
+	github.com/docker/go-connections v0.5.0 // indirect
+	github.com/docker/go-units v0.5.0 // indirect
+	github.com/felixge/httpsnoop v1.0.4 // indirect
+	github.com/go-logr/logr v1.4.1 // indirect
+	github.com/go-logr/stdr v1.2.2 // indirect
+	github.com/go-ole/go-ole v1.2.6 // indirect
+	github.com/gogo/protobuf v1.3.2 // indirect
+	github.com/google/uuid v1.6.0 // indirect
+	github.com/klauspost/compress v1.17.4 // indirect
+	github.com/lufia/plan9stats v0.0.0-20211012122336-39d0f177ccd0 // indirect
+	github.com/magiconair/properties v1.8.7 // indirect
+	github.com/moby/docker-image-spec v1.3.1 // indirect
+	github.com/moby/patternmatcher v0.6.0 // indirect
+	github.com/moby/sys/sequential v0.5.0 // indirect
+	github.com/moby/sys/user v0.1.0 // indirect
+	github.com/moby/term v0.5.0 // indirect
+	github.com/morikuni/aec v1.0.0 // indirect
+	github.com/opencontainers/go-digest v1.0.0 // indirect
+	github.com/opencontainers/image-spec v1.1.0 // indirect
+	github.com/pkg/errors v0.9.1 // indirect
+	github.com/pmezard/go-difflib v1.0.0 // indirect
+	github.com/power-devops/perfstat v0.0.0-20210106213030-5aafc221ea8c // indirect
+	github.com/shirou/gopsutil/v3 v3.23.12 // indirect
+	github.com/shoenig/go-m1cpu v0.1.6 // indirect
 	github.com/shopspring/decimal v1.2.0 // indirect
+	github.com/sirupsen/logrus v1.9.3 // indirect
+	github.com/stretchr/testify v1.9.0 // indirect
+	github.com/testcontainers/testcontainers-go v0.34.0 // indirect
+	github.com/tklauser/go-sysconf v0.3.12 // indirect
+	github.com/tklauser/numcpus v0.6.1 // indirect
+	github.com/yusufpapurcu/wmi v1.2.3 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.49.0 // indirect
+	go.opentelemetry.io/otel v1.24.0 // indirect
+	go.opentelemetry.io/otel/metric v1.24.0 // indirect
+	go.opentelemetry.io/otel/trace v1.24.0 // indirect
+	golang.org/x/crypto v0.22.0 // indirect
+	golang.org/x/sys v0.21.0 // indirect
+	gopkg.in/yaml.v3 v3.0.1 // indirect
 )
diff --git a/go.sum b/go.sum
@@ -1,18 +1,160 @@
+dario.cat/mergo v1.0.0 h1:AGCNq9Evsj31mOgNPcLyXc+4PNABt905YmuqPYYpBWk=
+dario.cat/mergo v1.0.0/go.mod h1:uNxQE+84aUszobStD9th8a29P2fMDhsBdgRYvZOxGmk=
+github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1 h1:UQHMgLO+TxOElx5B5HZ4hJQsoJ/PvUvKRhJHDQXO8P8=
+github.com/Azure/go-ansiterm v0.0.0-20210617225240-d185dfc1b5a1/go.mod h1:xomTg63KZ2rFqZQzSB4Vz2SUXa1BpHTVz9L5PTmPC4E=
+github.com/Microsoft/go-winio v0.6.2 h1:F2VQgta7ecxGYO8k3ZZz3RS8fVIXVxONVUPlNERoyfY=
+github.com/Microsoft/go-winio v0.6.2/go.mod h1:yd8OoFMLzJbo9gZq8j5qaps8bJ9aShtEA8Ipt1oGCvU=
 github.com/asaskevich/govalidator v0.0.0-20210307081110-f21760c49a8d h1:Byv0BzEl3/e6D5CLfI0j/7hiIEtvGVFPCZ7Ei2oq8iQ=
 github.com/asaskevich/govalidator v0.0.0-20210307081110-f21760c49a8d/go.mod h1:WaHUgvxTVq04UNunO+XhnAqY/wQc+bxr74GqbsZ/Jqw=
+github.com/brianvoe/gofakeit v3.18.0+incompatible h1:wDOmHc9DLG4nRjUVVaxA+CEglKOW72Y5+4WNxUIkjM8=
+github.com/brianvoe/gofakeit v3.18.0+incompatible/go.mod h1:kfwdRA90vvNhPutZWfH7WPaDzUjz+CZFqG+rPkOjGOc=
+github.com/cenkalti/backoff/v4 v4.2.1 h1:y4OZtCnogmCPw98Zjyt5a6+QwPLGkiQsYW5oUqylYbM=
+github.com/cenkalti/backoff/v4 v4.2.1/go.mod h1:Y3VNntkOUPxTVeUxJ/G5vcM//AlwfmyYozVcomhLiZE=
+github.com/containerd/containerd v1.7.18 h1:jqjZTQNfXGoEaZdW1WwPU0RqSn1Bm2Ay/KJPUuO8nao=
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+github.com/containerd/log v0.1.0 h1:TCJt7ioM2cr/tfR8GPbGf9/VRAX8D2B4PjzCpfX540I=
+github.com/containerd/log v0.1.0/go.mod h1:VRRf09a7mHDIRezVKTRCrOq78v577GXq3bSa3EhrzVo=
+github.com/containerd/platforms v0.2.1 h1:zvwtM3rz2YHPQsF2CHYM8+KtB5dvhISiXh5ZpSBQv6A=
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 github.com/davecgh/go-spew v1.1.0 h1:ZDRjVQ15GmhC3fiQ8ni8+OwkZQO4DARzQgrnXU1Liz8=
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+github.com/go-logr/logr v1.2.2/go.mod h1:jdQByPbusPIv2/zmleS9BjJVeZ6kBagPoEUsqbVz/1A=
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diff --git a/patient.go b/patient.go
@@ -8,7 +8,7 @@ import (
 )
 
 // CreateFHIRPatient creates a new FHIR Patient resource.
-func (c *Client) CreateFHIRPatient(ctx context.Context, input *models.FHIRPatient) (*models.PatientPayload, error) {
+func (c *Client) CreateFHIRPatient(ctx context.Context, input *models.FHIRPatient) (*models.FHIRPatient, error) {
 	payload, err := structToMap(input)
 	if err != nil {
 		return nil, fmt.Errorf("unable to turn %s input into a map: %w", patientResourceType, err)
@@ -21,23 +21,19 @@ func (c *Client) CreateFHIRPatient(ctx context.Context, input *models.FHIRPatien
 		return nil, fmt.Errorf("unable to create %s resource: %w", patientResourceType, err)
 	}
 
-	output := &models.PatientPayload{
-		PatientRecord: resource,
-	}
-
-	return output, nil
+	return resource, nil
 }
 
 // GetFHIRPatient retrieves instances of FHIRPatient by ID.
-func (c *Client) GetFHIRPatient(ctx context.Context, id string) (*models.PatientPayload, error) {
+func (c *Client) GetFHIRPatient(ctx context.Context, id string) (*models.FHIRPatient, error) {
 	resource := &models.FHIRPatient{}
 
 	err := c.getFHIRResource(ctx, patientResourceType, id, resource)
 	if err != nil {
 		return nil, fmt.Errorf("unable to get %s with ID %s, err: %w", patientResourceType, id, err)
 	}
 
-	return &models.PatientPayload{PatientRecord: resource}, nil
+	return resource, nil
 }
 
 // GetFHIRPatientEverything is used to retrieve all patient related information.