Update requirements for ITK-Elastix and BrainGlobe-atlas API dependen…

…cies

envs/requirements.txt

@@ -1,35 +1,42 @@
 --extra-index-url https://pypi.fury.io/dd8/
 appdirs==1.4.4
-bg-atlasapi @ https://github.com/brainglobe/bg-atlasapi/archive/dbecd16b2f63a8e167543f3358452a756bad0e64.tar.gz
+bg-atlasapi==1.0.2
 bg-space==0.6.0
-certifi==2022.12.7
+certifi==2023.5.7
 charset-normalizer==3.1.0
 click==8.1.3
-contourpy==1.0.7
+contourpy==1.1.0
 cycler==0.11.0
 fonttools==4.40.0
 future==0.18.3
 idna==3.4
 imagecodecs==2023.3.16
-imageio==2.27.0
-importlib-resources==5.12.0
+imageio==2.31.1
+itk==5.3.0
+itk-core==5.3.0
+itk-elastix==0.17.1
+itk-filtering==5.3.0
+itk-io==5.3.0
+itk-numerics==5.3.0
+itk-registration==5.3.0
+itk-segmentation==5.3.0
 javabridge==1.0.19.post9+gc8c12b4
 kiwisolver==1.4.4
 lazy_loader==0.2
-markdown-it-py==2.2.0
+markdown-it-py==3.0.0
 matplotlib==3.7.1
 matplotlib-scalebar==0.8.1
 mdurl==0.1.2
 meshio==5.3.4
 networkx==3.1
-numpy==1.24.2
-packaging==23.0
+numpy==1.25.0
+packaging==23.1
 pandas==2.0.2
 Pillow==9.5.0
 pyamg==5.0.0
 pyface==8.0.0
 Pygments==2.15.1
-pyparsing==3.0.9
+pyparsing==3.1.0
 PyQt5==5.15.9
 PyQt5-Qt5==5.15.2
 PyQt5-sip==12.12.1
@@ -40,14 +47,13 @@ PyWavelets==1.4.1
 PyYAML==6.0
 requests==2.31.0
 rich==13.4.2
-scikit-image==0.20.0
-scipy==1.9.1
-SimpleITK==2.3.0.dev117+g0640d
+scikit-image==0.21.0
+scipy==1.10.1
 six==1.16.0
 tifffile==2023.4.12
 traits==6.4.1
 traitsui==8.0.0
 treelib==1.6.4
-typing_extensions==4.5.0
+typing_extensions==4.6.3
+tzdata==2023.3
 urllib3==2.0.3
-zipp==3.15.0