add the Warning message for the Firth correction for beta estimation

saigegit · Mar 29, 2022 · abe92b4 · abe92b4
1 parent eec9237
commit abe92b4
Showing 1 changed file with 3 additions and 1 deletion.
diff --git a/R/SAIGE_Test_main.R b/R/SAIGE_Test_main.R
@@ -215,7 +215,9 @@ SPAGMMATtest = function(bgenFile = "",
     ratioVec = Get_Variance_Ratio(varianceRatioFile, cateVarRatioMinMACVecExclude, cateVarRatioMaxMACVecInclude, isGroupTest) #readInGLMM.R
 
 
-
+    if(is_Firth_beta){
+	warning("Firth correction in the program is still under evaluation!!")
+    }	    
     obj.model = ReadModel(GMMATmodelFile, chrom, LOCO, is_Firth_beta) #readInGLMM.R