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v0.2.1

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@konstin konstin released this 28 Jul 14:47
· 251 commits to develop since this release
  • BETA: in-silico mutagenesis using ProtTransBertBFD. This computes the likelihood that, according to Bert, a residue in a protein can be a certain amino acid, which can be used as an estimate for the effect of a mutation. This adds two a new mutagenesis and a new protocol plot_mutagenesis in the visualize stages, of which the first one computes the probabilities and writes them to a csv file while the latter visualizes the results as interactive plotly figure.
  • Support half_precision_model for prottrans_bert_bfd and prottrans_albert_bfd
  • Fix a n_components: 2 in the plotly protocol