| Branch |  |
 |
|---|---|---|
master |
 |
. |
develop |
 |
. |
A pirouette example that shows the pirouette plot for multiple DD trees.
This figure is to be used for the pirouette article.
Install pirouette using the peregrine
bash and R scripts.
Then, in the main folder of this repo, type:
sbatch scripts/rerun.sh
- One exemplary DD tree (instead of 10)
- Ten replicates on artifical tree (instead of DD)
- DNA alignent of 500 nucleotides (instead of 1k)
- Use 12 taxa (instead of 6)
- Use 24 taxa (instead of 6)
- Download the intermediate data at https://www.richelbilderbeek.nl/pirouette_example_43.zip
