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Prepare release #168

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merged 6 commits into from
Feb 12, 2025
Merged

Prepare release #168

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18710e0
feat: Add option to freeze pymc models
aseyboldt Dec 20, 2024
58effdf
chore: update pre-commit versions
aseyboldt Feb 11, 2025
dde8ddc
chore(release): update version and changelog
aseyboldt Feb 11, 2025
876c6b6
build: bump some dependency versions
aseyboldt Feb 12, 2025
e06caa9
ci: use ubuntu_latest on aarch64
aseyboldt Feb 11, 2025
af1cee9
ci: update CI script using maturin
aseyboldt Feb 12, 2025
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235 changes: 154 additions & 81 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
# This file is autogenerated by maturin v1.1.0
# This file is autogenerated by maturin v1.8.2
# To update, run
#
# maturin generate-ci --pytest github
# maturin generate-ci --pytest --platform all --zig github
#
name: CI

Expand All @@ -11,7 +11,7 @@ on:
- main
- master
tags:
- '*'
- "*"
pull_request:
workflow_dispatch:

Expand All @@ -20,74 +20,150 @@ permissions:

jobs:
linux:
runs-on: ubuntu-latest
runs-on: ${{ matrix.platform.runner }}
strategy:
fail-fast: false
matrix:
# If you update the targets here, be sure to also update the
# download-artifact step in the release job!
target: [x86_64, aarch64]
# pytensor is currently giving me issues on the other targets...
#target: [x86_64, aarch64, s390x, ppc64le]
platform:
- runner: ubuntu-22.04
target: x86_64
- runner: ubuntu-22.04
target: aarch64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v5
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
args: --release --out dist --find-interpreter
manylinux: 2_28
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter --zig
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
manylinux: auto
before-script-linux: |
dnf install -y clang-libs clang || apt install llvm-dev libclang-dev clang

dnf install -y clang-libs clang || sudo apt install llvm-dev libclang-dev clang
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: linux-${{ matrix.target }}-wheels
name: wheels-linux-${{ matrix.platform.target }}
path: dist
- name: pytest
if: ${{ startsWith(matrix.target, 'x86_64') }}
if: ${{ startsWith(matrix.platform.target, 'x86_64') }}
shell: bash
run: |
set -e
pip install --find-links dist --force-reinstall 'nutpie[all]'
pip install --find-links dist --force-reinstall --no-deps --no-index 'nutpie[all]'
pip install pytest
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
uv pip install pytest
pytest
- name: pytest
if: ${{ !startsWith(matrix.target, 'x86') }}
uses: uraimo/run-on-arch-action@v2.8.1
if: ${{ !startsWith(matrix.platform.target, 'x86') && matrix.platform.target != 'ppc64' }}
uses: uraimo/run-on-arch-action@v2
with:
arch: ${{ matrix.target }}
arch: ${{ matrix.platform.target }}
distro: ubuntu22.04
githubToken: ${{ github.token }}
install: |
apt-get update
apt-get install -y --no-install-recommends python3 python3-pip build-essential libhdf5-dev python3-dev pkg-config curl
pip3 install -U pip pytest
apt-get install -y --no-install-recommends python3 python3-pip curl make clang build-essential python3-dev
curl -LsSf https://astral.sh/uv/install.sh | sh
source $HOME/.local/bin/env
run: |
set -e
pip3 install --find-links dist --force-reinstall 'nutpie[all]'
pip3 install 'nutpie[all]' --find-links dist --no-deps --no-index --force-reinstall
source $HOME/.local/bin/env
uv pip install --system -U pip pytest
uv pip install --system 'nutpie[all]' --find-links dist --force-reinstall
pytest

# pyarrow doesn't currently seem to work on musllinux
#musllinux:
# runs-on: ${{ matrix.platform.runner }}
# strategy:
# fail-fast: false
# matrix:
# platform:
# - runner: ubuntu-22.04
# target: x86_64
# - runner: ubuntu-22.04
# target: aarch64
# steps:
# - uses: actions/checkout@v4
# - uses: actions/setup-python@v5
# with:
# python-version: "3.12"
# - name: Install uv
# uses: astral-sh/setup-uv@v5
# - name: Build wheels
# uses: PyO3/maturin-action@v1
# with:
# target: ${{ matrix.platform.target }}
# args: --release --out dist --find-interpreter
# sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
# manylinux: musllinux_1_2
# before-script-linux: |
# dnf install -y clang-libs clang || apt install llvm-dev libclang-dev clang
# - name: Upload wheels
# uses: actions/upload-artifact@v4
# with:
# name: wheels-musllinux-${{ matrix.platform.target }}
# path: dist
# - name: pytest
# if: ${{ startsWith(matrix.platform.target, 'x86_64') }}
# uses: addnab/docker-run-action@v3
# with:
# image: alpine:latest
# options: -v ${{ github.workspace }}:/io -w /io
# run: |
# set -e
# apk add py3-pip py3-virtualenv curl make clang
# curl -LsSf https://astral.sh/uv/install.sh | sh
# source $HOME/.local/bin/env
# python3 -m virtualenv .venv
# source .venv/bin/activate
# # No numba packages for alpine
# uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
# uv pip install pytest
# pytest
# - name: pytest
# if: ${{ !startsWith(matrix.platform.target, 'x86') }}
# uses: uraimo/run-on-arch-action@v2
# with:
# arch: ${{ matrix.platform.target }}
# distro: alpine_latest
# githubToken: ${{ github.token }}
# install: |
# apk add py3-virtualenv curl make clang
# curl -LsSf https://astral.sh/uv/install.sh | sh
# source $HOME/.local/bin/env
# run: |
# set -e
# python3 -m virtualenv .venv
# source $HOME/.local/bin/env
# source .venv/bin/activate
# uv pip install pytest
# # No numba packages for alpine
# uv pip install 'nutpie[stan]' --find-links dist --force-reinstall
# pytest

windows:
runs-on: windows-latest
runs-on: ${{ matrix.platform.runner }}
strategy:
fail-fast: false
matrix:
# If you update the targets here, be sure to also update the
# download-artifact step in the release job!
target: [x64]
platform:
- runner: windows-latest
target: x64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
architecture: ${{ matrix.target }}
python-version: "3.12"
architecture: ${{ matrix.platform.target }}
- name: Install uv
uses: astral-sh/setup-uv@v5
- name: Install LLVM and Clang
uses: KyleMayes/install-llvm-action@v2
with:
Expand All @@ -102,59 +178,63 @@ jobs:
env:
LIBCLANG_PATH: ${{ runner.temp }}/llvm/lib
with:
target: ${{ matrix.target }}
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: 'true'
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: windows-${{ matrix.target }}-wheels
name: wheels-windows-${{ matrix.platform.target }}
path: dist
- name: pytest
if: ${{ !startsWith(matrix.target, 'aarch64') }}
if: ${{ !startsWith(matrix.platform.target, 'aarch64') }}
shell: bash
run: |
set -e
pip install "nutpie[all]" --find-links dist --force-reinstall
pip install --find-links dist --force-reinstall --no-deps --no-index 'nutpie[all]'
pip install pytest
python3 -m venv .venv
source .venv/Scripts/activate
uv pip install "nutpie[all]" --find-links dist --force-reinstall
uv pip install pytest
pytest

macos:
runs-on: macos-latest
runs-on: ${{ matrix.platform.runner }}
strategy:
fail-fast: false
matrix:
# If you update the targets here, be sure to also update the
# download-artifact step in the release job!
target: [x86_64, aarch64]
platform:
- runner: macos-13
target: x86_64
- runner: macos-14
target: aarch64
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: '3.10'
python-version: "3.12"
- name: Install uv
uses: astral-sh/setup-uv@v5
- uses: maxim-lobanov/setup-xcode@v1
with:
xcode-version: latest-stable
- name: Build wheels
uses: PyO3/maturin-action@v1
with:
target: ${{ matrix.target }}
target: ${{ matrix.platform.target }}
args: --release --out dist --find-interpreter
sccache: 'true'
sccache: ${{ !startsWith(github.ref, 'refs/tags/') }}
- name: Upload wheels
uses: actions/upload-artifact@v4
with:
name: macos-${{ matrix.target }}-wheels
name: wheels-macos-${{ matrix.platform.target }}
path: dist
- name: pytest
if: ${{ startsWith(matrix.target, 'aarch64') }}
shell: bash
run: |
set -e
pip install 'nutpie[all]' --find-links dist --force-reinstall
pip install --find-links dist --force-reinstall --no-deps --no-index 'nutpie[all]'
pip install pytest
python3 -m venv .venv
source .venv/bin/activate
uv pip install 'nutpie[all]' --find-links dist --force-reinstall
uv pip install pytest
pytest

sdist:
Expand All @@ -169,45 +249,38 @@ jobs:
- name: Upload sdist
uses: actions/upload-artifact@v4
with:
name: sdist
name: wheels-sdist
path: dist

release:
name: Release
runs-on: ubuntu-latest
if: "startsWith(github.ref, 'refs/tags/')"
if: ${{ startsWith(github.ref, 'refs/tags/') || github.event_name == 'workflow_dispatch' }}
needs: [linux, windows, macos, sdist]
permissions:
# Use to sign the release artifacts
id-token: write
# Used to upload release artifacts
contents: write
# Used to generate artifact attestation
attestations: write
steps:
# Combine all the wheels and sdists into a single directory
- name: Download artifacts
uses: actions/download-artifact@v4
with:
name: linux-x86_64-wheels
path: dist
- uses: actions/download-artifact@v4
with:
name: linux-aarch64-wheels
path: dist
- uses: actions/download-artifact@v4
- name: Generate artifact attestation
uses: actions/attest-build-provenance@v1
with:
name: windows-x64-wheels
path: dist
- uses: actions/download-artifact@v4
with:
name: macos-x86_64-wheels
path: dist
- uses: actions/download-artifact@v4
with:
name: macos-aarch64-wheels
path: dist
- uses: actions/download-artifact@v4
with:
name: sdist
path: dist
subject-path: "wheels-*/*"
- name: Publish to PyPI
if: ${{ startsWith(github.ref, 'refs/tags/') }}
uses: PyO3/maturin-action@v1
env:
MATURIN_PYPI_TOKEN: ${{ secrets.PYPI_API_TOKEN }}
with:
command: upload
args: --skip-existing dist/*
args: --non-interactive --skip-existing wheels-*/*
- name: Upload to GitHub Release
uses: softprops/action-gh-release@v1
with:
files: |
wasm-wheels/*.whl
prerelease: ${{ contains(github.ref, 'alpha') || contains(github.ref, 'beta') }}
4 changes: 2 additions & 2 deletions .pre-commit-config.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@ ci:

repos:
- repo: https://github.com/pre-commit/pre-commit-hooks
rev: v4.6.0
rev: v5.0.0
hooks:
- id: debug-statements
- id: check-merge-conflict
Expand All @@ -16,7 +16,7 @@ repos:
- id: trailing-whitespace

- repo: https://github.com/astral-sh/ruff-pre-commit
rev: v0.5.6
rev: v0.9.6
hooks:
- id: ruff
args: ["--fix", "--output-format=full"]
Expand Down
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