Toolbox and related resources used to analyze LINCS data

Based on the work of l1ktools, we implement our own code to analyze the LINCS data. The repository mainly contain following catalogs.

data extraction

Similar to the c3 of lincsclould, we implement similar functions for our own purpose.

gene expression signature comparison

API used to compare gene expression signatures. Metrics include GSEA, Spearman rank correlation, RRHO...

web

Code for web visualization.

miscellaneous

R code used to compare the similarities of different cell lines of a given gene for trt_sh data. R code used to compare the similarities of a drug and all other drugs.