revdepcheck

poissonconsulting · Jan 21, 2025 · 81c36eb · 81c36eb
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diff --git a/revdep/README.md b/revdep/README.md
@@ -2,23 +2,29 @@
 
 |field    |value                                      |
 |:--------|:------------------------------------------|
-|version  |R version 4.4.1 (2024-06-14)               |
-|os       |macOS Sonoma 14.5                          |
+|version  |R version 4.4.2 (2024-10-31)               |
+|os       |macOS Sequoia 15.2                         |
 |system   |aarch64, darwin20                          |
 |ui       |RStudio                                    |
 |language |(EN)                                       |
 |collate  |en_US.UTF-8                                |
 |ctype    |en_US.UTF-8                                |
 |tz       |America/Vancouver                          |
-|date     |2024-07-09                                 |
-|rstudio  |2024.04.2+764 Chocolate Cosmos (desktop)   |
-|pandoc   |3.2.1 @ /opt/homebrew/bin/ (via rmarkdown) |
+|date     |2025-01-14                                 |
+|rstudio  |2024.12.0+467 Kousa Dogwood (desktop)      |
+|pandoc   |3.6.2 @ /opt/homebrew/bin/ (via rmarkdown) |
 
 # Dependencies
 
-|package |old   |new   |Δ  |
-|:-------|:-----|:-----|:--|
-|chk     |0.9.1 |0.9.2 |*  |
+|package |old        |new        |Δ  |
+|:-------|:----------|:----------|:--|
+|chk     |0.9.2.9006 |0.9.2.9900 |*  |
 
 # Revdeps
 
+## New problems (1)
+
+|package   |version |error     |warning |note |
+|:---------|:-------|:---------|:-------|:----|
+|[biodbKegg](problems.md#biodbkegg)|1.6.1   |-1 __+1__ |        |     |
+
diff --git a/revdep/cran.md b/revdep/cran.md
@@ -1,6 +1,6 @@
 ## revdepcheck results
 
-We checked 38 reverse dependencies (20 from CRAN + 18 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
+We checked 70 reverse dependencies (20 from CRAN + 50 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
 
  * We saw 0 new problems
  * We failed to check 0 packages

diff --git a/revdep/problems.md b/revdep/problems.md
@@ -1 +1,44 @@
-*Wow, no problems at all. :)*
+# biodbKegg
+
+<details>
+
+* Version: 1.6.1
+* GitHub: https://github.com/pkrog/biodbKegg
+* Source code: https://github.com/cran/biodbKegg
+* Date/Publication: 2023-08-02
+* Number of recursive dependencies: 125
+
+Run `revdepcheck::revdep_details(, "biodbKegg")` for more info
+
+</details>
+
+## Newly broken
+
+*   checking tests ...
+    ```
+      Running ‘testthat.R’
+     ERROR
+    Running the tests in ‘tests/testthat.R’ failed.
+    Last 13 lines of output:
+      ── Failure ('test_700_reaction.R:16:1'): We can search for an entry by name. ───
+      id %in% ids is not TRUE
+      
+      `actual`:   FALSE
+      `expected`: TRUE 
+      While searching for entry R00105 by name "ATP:NADH 2'-phosphotransferase".
+      Backtrace:
+          ▆
+       1. ├─base::do.call(fct, params)
+       2. └─biodb (local) `<fn>`(conn = `<KggRctnC>`, opt = `<named list>`)
+       3.   └─testthat::expect_true(id %in% ids, msg)
+      
+      [ FAIL 12 | WARN 0 | SKIP 0 | PASS 1336 ]
+      Error: Test failures
+      Execution halted
+    ```
+
+## Newly fixed
+
+*   R CMD check timed out
+    
+