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mpl: Use CPU affinity functions with standard names #5789

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merged 1 commit into from
Feb 23, 2022

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giordano
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@giordano giordano commented Jan 23, 2022

Pull Request Description

The functions with leading underscores are internally used in some systems, but
the user-facing ones are without underscores:
https://linux.die.net/man/3/cpu_set. The underscore-prefixed names are not
available on Musl systems, leading to a linking error:

[01:19:03] libtool: link: cc -fvisibility=hidden -DNDEBUG -DNVALGRIND -O3 -o src/env/.libs/mpichversion src/env/mpichversion.o  lib/.libs/libmpi.so -lpthread -lm -Wl,-rpath -Wl,/workspace/destdir/lib
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ISSET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_SET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ZERO_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to collect2: error: ld returned 1 exit status
[01:19:03] `__CPU_ISSET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_SET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ZERO_S'
[01:19:03] collect2: error: ld returned 1 exit status
[01:19:03] make[2]: *** [Makefile:14129: src/env/mpichversion] Error 1
[01:19:03] make[2]: *** Waiting for unfinished jobs....
[01:19:03] make[2]: *** [Makefile:14135: src/env/mpivars] Error 1

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@raffenet
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Thanks for your patch! Could you please sign and return the contributor's agreement to [email protected]? https://www.mpich.org/documentation/contributor-docs/

@giordano
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I will, but it'll take a few more days.

@giordano
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giordano commented Feb 3, 2022

I signed and submitted the CLA (I don't know how long it takes to be processed) and rebased this PR on main

The functions with leading underscores are internally used in some systems, but
the user-facing ones are without underscores:
https://linux.die.net/man/3/cpu_set.  The underscore-prefixed names are not
available on Musl systems, leading to a linking error:

```
[01:19:03] libtool: link: cc -fvisibility=hidden -DNDEBUG -DNVALGRIND -O3 -o src/env/.libs/mpichversion src/env/mpichversion.o  lib/.libs/libmpi.so -lpthread -lm -Wl,-rpath -Wl,/workspace/destdir/lib
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ISSET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_SET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ZERO_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to collect2: error: ld returned 1 exit status
[01:19:03] `__CPU_ISSET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_SET_S'
[01:19:03] /opt/x86_64-linux-musl/bin/../lib/gcc/x86_64-linux-musl/8.1.0/../../../../x86_64-linux-musl/bin/ld: lib/.libs/libmpi.so: undefined reference to `__CPU_ZERO_S'
[01:19:03] collect2: error: ld returned 1 exit status
[01:19:03] make[2]: *** [Makefile:14129: src/env/mpichversion] Error 1
[01:19:03] make[2]: *** Waiting for unfinished jobs....
[01:19:03] make[2]: *** [Makefile:14135: src/env/mpivars] Error 1
```
@giordano
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Bump 🙂 CLA seems to have been accepted

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@raffenet raffenet left a comment

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Thanks for the reminder!

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I don't know why the warnings checker didn't report a status. I'll run a sanity check just in case.
test:mpich/ch3/tcp

@raffenet raffenet merged commit ebe7e0a into pmodels:main Feb 23, 2022
@giordano giordano deleted the mg/mpl-thread-musl branch February 23, 2022 21:15
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2 participants