higlass-python

Python bindings to the HiGlass viewer.

For development

• Install the package in editable mode. (The module will be imported from the development directory, rather than copied to site-packages).

$ pip install -e .

• Build and enable the Jupyter Notebook Extension. (With the --symlink option, the assets in higlass/static are linked to the extension registry rather than copied.)

$ python setup.py jsdeps
$ jupyter nbextension enable --py --sys-prefix widgetsnbextension
$ jupyter nbextension install --py --symlink --sys-prefix higlass
$ jupyter nbextension enable --py --sys-prefix higlass

• Uninstall the Jupyter Notebook Extension

$ jupyter nbextension uninstall --py --sys-prefix higlass

• Experimental: install the Jupyter Lab Extension

$ cd js && jupyter labextension link .