Merge pull request #111 from streeve/fixup_spelling

fixup: file endings and spelling

.gitignore

@@ -4,4 +4,4 @@
 *log
 *pdf
 *DS_Store
-*~
+*~

.pre-commit-config.yaml

@@ -11,3 +11,9 @@ repos:
       - id: clang-format
         types_or: [c++]
         args: ["-style=file", "-i"]
+
+  - repo: https://github.com/codespell-project/codespell
+    rev: v2.2.6
+    hooks:
+      - id: codespell
+        args: ["-w"]

LICENSE

@@ -23,4 +23,4 @@ DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
 SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
 CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
 OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

doc/flip/explicit_single_phase/flip.bib

@@ -10,4 +10,4 @@ @article{brackbill_jcp86
 	volume = {65},
 	journal = {Journal of Computational Physics},
 	doi = {10.1016/0021-9991(86)90211-1}
-}
+}

doc/flip/explicit_single_phase/flip_3d_chart.tex

@@ -221,7 +221,7 @@
     \item $\ui$,$\uio$,$\uiz$ velocity, updated velocity, previous velocity
     \item $\uit$ $\theta$-weighted velocity
 \end{itemize}
-{\large \bf Auxillary variable} %defined at the center of cell
+{\large \bf Auxiliary variable} %defined at the center of cell
 \begin{itemize}
     \item $\Delta t$ time step
     \item $\theta$ coefficient of time integration scheme, $\frac{1}{2} \le \theta \le 1$
@@ -238,7 +238,7 @@
 %\clearpage
 %\noindent{\large \bf Algorithm}
 %\begin{enumerate}
-%\item compute mapping, jacobian of mapping, volume and geometric coefficient of cell. Note that this is only first order independent of particle shapefunction since it relates only transformation betweeen physical and reference frame, which is linear function
+%\item compute mapping, jacobian of mapping, volume and geometric coefficient of cell. Note that this is only first order independent of particle shapefunction since it relates only transformation between physical and reference frame, which is linear function
 %    \noindent
 %    \begin{align*}
 %	N &=
@@ -549,7 +549,7 @@
 \clearpage
 \noindent{\large \bf Algorithm}
 \begin{enumerate}
-    \item compute mapping, jacobian of mapping, volume and geometric coefficient of cell. Note that this is only first order independent of particle shapefunction since it relates only transformation betweeen physical and reference frame, which is linear function
+    \item compute mapping, jacobian of mapping, volume and geometric coefficient of cell. Note that this is only first order independent of particle shapefunction since it relates only transformation between physical and reference frame, which is linear function
     \noindent
     \begin{align*}
     N &=
@@ -869,7 +869,7 @@
 %	\item $\pcp = N\left( \frac{1}{h_x}(x_p - x_v)  \right)N\left( \frac{1}{h_y}(y_p - y_v)  \right)N\left( \frac{1}{h_z}(z_p - z_v)\right)$
 \end{itemize}
 
-%\item compute geometric coefficient, so that momentum is presserved between phsycal and reference frame. Note that this is only first order independent of particle shapefunction since it relates only transformation betweeen physical and reference frame, which is linear function
+%\item compute geometric coefficient, so that momentum is presserved between phsycal and reference frame. Note that this is only first order independent of particle shapefunction since it relates only transformation between physical and reference frame, which is linear function
 %\begin{itemize}
 %	\item \begin{equation}
 %	\dic = \int \nabla s_v dV / \Vc =

src/Picasso_APIC.hpp

@@ -117,7 +117,7 @@ KOKKOS_INLINE_FUNCTION void p2g(
                 distance( Dim::K ) = sd.d[Dim::K][k];
 
                 // Compute the action of B_p on the distance scaled by the
-                // intertial tensor scaling factor.
+                // inertial tensor scaling factor.
                 auto D_p_inv_B_p_d = D_p_inv * B_p * distance;
 
                 // Weight times mass.

src/Picasso_BatchedLinearAlgebra.hpp

@@ -1798,7 +1798,7 @@ struct VectorView
     KOKKOS_DEFAULTED_FUNCTION
     VectorView() = default;
 
-    // Vector construtor.
+    // Vector constructor.
     KOKKOS_INLINE_FUNCTION
     VectorView( const Vector<T, N>& v )
         : _d( v.data() )
@@ -3464,7 +3464,7 @@ struct QuaternionView
     KOKKOS_DEFAULTED_FUNCTION
     QuaternionView() = default;
 
-    // Vector construtor.
+    // Vector constructor.
     KOKKOS_INLINE_FUNCTION
     QuaternionView( const Quaternion<T>& q )
         : _d( q.data() )

src/Picasso_FacetGeometry.hpp

@@ -80,7 +80,7 @@ struct FacetGeometryData
     // into the facet array for each surface.
     Kokkos::View<int*, MemorySpace> surface_offsets;
 
-    // Local id of the volume the representes the global axis-aligned bounding
+    // Local id of the volume the represents the global axis-aligned bounding
     // box.
     int global_bounding_volume_id;
 
@@ -510,7 +510,7 @@ KOKKOS_FUNCTION bool pointFacetProjection( const float x[3], const float r[3],
                                            float y[3] )
 {
     // Build the system of equations to solve for intersection. Fire the ray
-    // in the Y direction - this choice is arbitary.
+    // in the Y direction - this choice is arbitrary.
     Mat3<float> A;
     Vec3<float> b;
     for ( int i = 0; i < 3; ++i )

src/Picasso_ParticleLevelSet.hpp

@@ -216,7 +216,7 @@ class ParticleLevelSet
       input color is negative then all particles will be used in the level set
       regardless of color.
       \param inputs Level set settings.
-      \param mesh The mesh over which to build the signed distnace function.
+      \param mesh The mesh over which to build the signed distance function.
       \param color The particle color over which to build the level set. Use
       -1 if the level set is to be built over all particles.
     */

unit_test/tstLevelSetRedistance.hpp

@@ -272,7 +272,7 @@ TEST( TEST_CATEGORY, scaled_sphere_redistance_test )
 //     };
 
 //     // Test. The tolerance here is large because of the degenerate geometric
-//     // features. We will need to revist this in the future.
+//     // features. We will need to revisit this in the future.
 //     runTest( phi_r, phi_r, 5.0 );
 // }
 

unit_test/tstMarchingCubes.hpp

@@ -238,7 +238,7 @@ TEST( TEST_CATEGORY, scaled_sphere_redistance_test )
 //     };
 
 //     // Test. The tolerance here is large because of the degenerate geometric
-//     // features. We will need to revist this in the future.
+//     // features. We will need to revisit this in the future.
 //     runTest( phi_r, "box_good_guess_mc_mesh.stl" );
 // }