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| # This workflow uses actions that are not certified by GitHub. | ||
| # They are provided by a third-party and are governed by | ||
| # separate terms of service, privacy policy, and support | ||
| # documentation. | ||
| # lintr provides static code analysis for R. | ||
| # It checks for adherence to a given style, | ||
| # identifying syntax errors and possible semantic issues, | ||
| # then reports them to you so you can take action. | ||
| # More details at https://lintr.r-lib.org/ | ||
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| name: lintr | ||
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| on: | ||
| push: | ||
| branches: [ "master" ] | ||
| pull_request: | ||
| branches: [ "master" ] | ||
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| permissions: | ||
| contents: read | ||
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| jobs: | ||
| lintr: | ||
| name: Run lintr scanning | ||
| runs-on: ubuntu-latest | ||
| permissions: | ||
| contents: read # for checkout to fetch code | ||
| security-events: write # for github/codeql-action/upload-sarif to upload SARIF results | ||
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| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v3 | ||
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| - name: Setup R | ||
| uses: r-lib/actions/setup-r@v2 | ||
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| - name: Setup lintr | ||
| uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: lintr | ||
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| - name: Run lintr | ||
| run: lintr::sarif_output(lintr::lint_dir("."), "lintr-results.sarif") | ||
| shell: Rscript {0} | ||
| continue-on-error: true | ||
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| - name: Upload analysis results to GitHub | ||
| uses: github/codeql-action/upload-sarif@v2 | ||
| with: | ||
| sarif_file: lintr-results.sarif | ||
| wait-for-processing: true |
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| Original file line number | Diff line number | Diff line change |
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | ||
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | ||
| on: | ||
| push: | ||
| branches: | ||
| - master | ||
| branches: [main, master] | ||
| pull_request: | ||
| branches: | ||
| - master | ||
| branches: [main, master] | ||
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| name: test-coverage | ||
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| jobs: | ||
| test-coverage: | ||
| runs-on: macOS-latest | ||
| runs-on: ubuntu-latest | ||
| env: | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
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| steps: | ||
| - uses: actions/checkout@v2 | ||
| - uses: actions/checkout@v3 | ||
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| - uses: r-lib/actions/setup-r@master | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| use-public-rspm: true | ||
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| - uses: r-lib/actions/setup-pandoc@master | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::covr | ||
| needs: coverage | ||
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| - name: Query dependencies | ||
| - name: Test coverage | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| covr::codecov( | ||
| quiet = FALSE, | ||
| clean = FALSE, | ||
| install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") | ||
| ) | ||
| shell: Rscript {0} | ||
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| - name: Cache R packages | ||
| uses: actions/cache@v2 | ||
| with: | ||
| path: ${{ env.R_LIBS_USER }} | ||
| key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | ||
| restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | ||
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| - name: Install dependencies | ||
| - name: Show testthat output | ||
| if: always() | ||
| run: | | ||
| install.packages(c("remotes")) | ||
| remotes::install_deps(dependencies = TRUE) | ||
| remotes::install_cran("covr") | ||
| shell: Rscript {0} | ||
| ## -------------------------------------------------------------------- | ||
| find ${{ runner.temp }}/package -name 'testthat.Rout*' -exec cat '{}' \; || true | ||
| shell: bash | ||
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| - name: Test coverage | ||
| run: covr::codecov() | ||
| shell: Rscript {0} | ||
| - name: Upload test results | ||
| if: failure() | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: coverage-test-failures | ||
| path: ${{ runner.temp }}/package |