Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

CI: Install fail for PyYAML #27161

Closed
TomAugspurger opened this issue Jul 1, 2019 · 1 comment · Fixed by #27163
Closed

CI: Install fail for PyYAML #27161

TomAugspurger opened this issue Jul 1, 2019 · 1 comment · Fixed by #27163
Labels
Blocker Blocking issue or pull request for an upcoming release Build Library building on various platforms
Milestone
0.25.0

Comments

@TomAugspurger
Copy link
Contributor

conda env create -n travis-36-cov --force -f ci/deps/travis-36-cov.yaml

is failing with

Downloading and Extracting Packages
psutil-5.6.2         | 318 KB    | ######################################################################################################################################### | 100%
dask-2.0.0           | 11 KB     | ######################################################################################################################################### | 100%
dask-core-2.0.0      | 576 KB    | ######################################################################################################################################### | 100%
distributed-2.0.1    | 365 KB    | ######################################################################################################################################### | 100%
gcsfs-0.2.3          | 26 KB     | ######################################################################################################################################### | 100%
pytz-2019.1          | 236 KB    | ######################################################################################################################################### | 100%
google-api-core-1.13 | 79 KB     | ######################################################################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Ran pip subprocess with arguments:
['/Users/taugspurger/miniconda3/envs/travis-36-cov/bin/python', '-m', 'pip', 'install', '-U', '-r', '/Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt']
Pip subprocess output:
Collecting brotlipy (from -r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 1))
  Using cached https://files.pythonhosted.org/packages/7c/17/365232505a464b27b993f7fed99d235eb0a46a538a470d6d9a4b60b6055d/brotlipy-0.7.0-cp36-cp36m-macosx_10_6_intel.whl
Requirement already up-to-date: coverage in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from -r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 2)) (4.5.3)
Collecting moto (from -r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/68/43/c7afe0bfbd44f8a72981bd96c2c3b159333625e4aef24397a93870346b4d/moto-1.3.9.tar.gz (819kB)
Collecting pandas-datareader (from -r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/cc/5c/ea5b6dcfd0f55c5fb1e37fb45335ec01cceca199b8a79339137f5ed269e0/pandas_datareader-0.7.0-py2.py3-none-any.whl
Requirement already up-to-date: python-dateutil in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from -r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 5)) (2.8.0)
Requirement already satisfied, skipping upgrade: cffi>=1.0.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from brotlipy->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 1)) (1.12.3)
Requirement already satisfied, skipping upgrade: Jinja2>=2.10.1 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2.10.1)
Collecting boto>=2.36.0 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/23/10/c0b78c27298029e4454a472a1919bde20cb182dab1662cec7f2ca1dcc523/boto-2.49.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: boto3>=1.9.86 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (1.9.162)
Requirement already satisfied, skipping upgrade: botocore>=1.12.86 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (1.12.163)
Requirement already satisfied, skipping upgrade: cryptography>=2.3.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2.7)
Collecting datetime (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/73/22/a5297f3a1f92468cc737f8ce7ba6e5f245fcfafeae810ba37bd1039ea01c/DateTime-4.3-py2.py3-none-any.whl (60kB)
Requirement already satisfied, skipping upgrade: requests>=2.5 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2.22.0)
Collecting xmltodict (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/28/fd/30d5c1d3ac29ce229f6bdc40bbc20b28f716e8b363140c26eff19122d8a5/xmltodict-0.12.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: six>1.9 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (1.12.0)
Collecting werkzeug (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/9f/57/92a497e38161ce40606c27a86759c6b92dd34fcdb33f64171ec559257c02/Werkzeug-0.15.4-py2.py3-none-any.whl
Collecting PyYAML==3.13 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
Requirement already satisfied, skipping upgrade: pytz in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2019.1)
Collecting python-jose<4.0.0 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/96/da/c0dcc5e7a98a53440b8db3cf9771345fa696754f79e8734ea59123f7d734/python_jose-3.0.1-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: mock in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (3.0.5)
Collecting docker>=2.5.1 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/95/47/5560c9cf0c92b50da24216f0e7733250fbed5a497f69e3c70e1be62143fe/docker-4.0.2-py2.py3-none-any.whl
Collecting jsondiff==1.1.2 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
Collecting aws-xray-sdk!=0.96,>=0.93 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/58/f2/79f7918f4ddeec525742ddd4607abe4a82a29a6bc4c7e297995f59a18965/aws_xray_sdk-2.4.2-py2.py3-none-any.whl
Collecting responses>=0.9.0 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/d1/5a/b887e89925f1de7890ef298a74438371ed4ed29b33def9e6d02dc6036fd8/responses-0.10.6-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: idna<2.9,>=2.5 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2.8)
Collecting cfn-lint (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/9c/f7/aa8542ab69196d5da1bcfa70845c1767e7a02dd40cd7b396e9f6eeb17584/cfn_lint-0.22.0-py3-none-any.whl (2.5MB)
Collecting sshpubkeys<4.0,>=3.1.0 (from moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/08/96/b5308537f88df326939006a8331a2edc528f25d920c49dbd9fc2c53c4e68/sshpubkeys-3.1.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: pandas>=0.19.2 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from pandas-datareader->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 4)) (0.24.2)
Collecting lxml (from pandas-datareader->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 4))
  Using cached https://files.pythonhosted.org/packages/00/c0/9c435597032e43a29af816fb0bee71c3c798635c9da023ea241084e80393/lxml-4.3.4-cp36-cp36m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl
Collecting wrapt (from pandas-datareader->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 4))
Requirement already satisfied, skipping upgrade: pycparser in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from cffi>=1.0.0->brotlipy->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 1)) (2.19)
Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from Jinja2>=2.10.1->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (1.1.1)
Requirement already satisfied, skipping upgrade: s3transfer<0.3.0,>=0.2.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from boto3>=1.9.86->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (0.2.0)
Requirement already satisfied, skipping upgrade: jmespath<1.0.0,>=0.7.1 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from boto3>=1.9.86->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (0.9.4)
Requirement already satisfied, skipping upgrade: docutils>=0.10 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from botocore>=1.12.86->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (0.14)
Requirement already satisfied, skipping upgrade: urllib3<1.26,>=1.20 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from botocore>=1.12.86->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (1.24.2)
Requirement already satisfied, skipping upgrade: asn1crypto>=0.21.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from cryptography>=2.3.0->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (0.24.0)
Collecting zope.interface (from datetime->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/f8/11/0d2c7017ee0014801251470b4ace8590ff6f8acdf431b04e08cdb2661246/zope.interface-4.6.0-cp36-cp36m-macosx_10_6_intel.whl (140kB)
Requirement already satisfied, skipping upgrade: chardet<3.1.0,>=3.0.2 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from requests>=2.5->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (3.0.4)
Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from requests>=2.5->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (2019.6.16)
Requirement already satisfied, skipping upgrade: rsa in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from python-jose<4.0.0->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (3.4.2)
Collecting ecdsa<1.0 (from python-jose<4.0.0->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/23/a8/8aa68e70959e1287da9154e5164bb8bd5dd7025e41ae54e8d177b8d165c9/ecdsa-0.13.2-py2.py3-none-any.whl
Collecting future<1.0 (from python-jose<4.0.0->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
Collecting websocket-client>=0.32.0 (from docker>=2.5.1->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/29/19/44753eab1fdb50770ac69605527e8859468f3c0fd7dc5a76dd9c4dbd7906/websocket_client-0.56.0-py2.py3-none-any.whl
Collecting jsonpickle (from aws-xray-sdk!=0.96,>=0.93->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/07/07/c157520a3ebd166c8c24c6ae0ecae7c3968eb4653ff0e5af369bb82f004d/jsonpickle-1.2-py2.py3-none-any.whl
Collecting jsonpatch (from cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/a0/e6/d50d526ae2218b765ddbdb2dda14d65e19f501ce07410b375bc43ad20b7a/jsonpatch-1.23-py2.py3-none-any.whl
Collecting aws-sam-translator>=1.12.0 (from cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Downloading https://files.pythonhosted.org/packages/dd/79/d4eabac6f1c39d2502f241f0473b4854d713d8e745c53ae557476a8027d1/aws-sam-translator-1.12.0.tar.gz (97kB)
Collecting jsonschema~=3.0 (from cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/aa/69/df679dfbdd051568b53c38ec8152a3ab6bc533434fc7ed11ab034bf5e82f/jsonschema-3.0.1-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: setuptools in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (41.0.1)
Requirement already satisfied, skipping upgrade: numpy>=1.12.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from pandas>=0.19.2->pandas-datareader->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 4)) (1.15.4)
Requirement already satisfied, skipping upgrade: pyasn1>=0.1.3 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from rsa->python-jose<4.0.0->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (0.4.5)
Collecting jsonpointer>=1.9 (from jsonpatch->cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/18/b0/a80d29577c08eea401659254dfaed87f1af45272899e1812d7e01b679bc5/jsonpointer-2.0-py2.py3-none-any.whl
Requirement already satisfied, skipping upgrade: attrs>=17.4.0 in /Users/taugspurger/miniconda3/envs/travis-36-cov/lib/python3.6/site-packages (from jsonschema~=3.0->cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3)) (19.1.0)
Collecting pyrsistent>=0.14.0 (from jsonschema~=3.0->cfn-lint->moto->-r /Users/taugspurger/sandbox/pandas/ci/deps/condaenv.dhb14niq.requirements.txt (line 3))
  Using cached https://files.pythonhosted.org/packages/68/0b/f514e76b4e074386b60cfc6c8c2d75ca615b81e415417ccf3fac80ae0bf6/pyrsistent-0.15.2.tar.gz
Building wheels for collected packages: moto, aws-sam-translator, pyrsistent
  Building wheel for moto (setup.py): started
  Building wheel for moto (setup.py): finished with status 'done'
  Stored in directory: /Users/taugspurger/Library/Caches/pip/wheels/a6/60/88/3c5fb3de8983f06caab8d5343a20a59ca65e4cc0fb3b9d89c3
  Building wheel for aws-sam-translator (setup.py): started
  Building wheel for aws-sam-translator (setup.py): finished with status 'done'
  Stored in directory: /Users/taugspurger/Library/Caches/pip/wheels/dc/c5/93/a32768379da1c365917cfffad512c071639a71d93569924398
  Building wheel for pyrsistent (setup.py): started
  Building wheel for pyrsistent (setup.py): finished with status 'done'
  Stored in directory: /Users/taugspurger/Library/Caches/pip/wheels/6b/b9/15/c8c6a1e095a370e8c3273e65a5c982e5cf355dde16d77502f5
Successfully built moto aws-sam-translator pyrsistent
Installing collected packages: brotlipy, boto, zope.interface, datetime, xmltodict, werkzeug, PyYAML, ecdsa, future, python-jose, websocket-client, docker, jsondiff, jsonpickle, wrapt, aws-xray-sdk, responses, jsonpointer, jsonpatch, pyrsistent, jsonschema, aws-sam-translator, cfn-lint, sshpubkeys, moto, lxml, pandas-datareader
  Found existing installation: PyYAML 5.1

Pip subprocess error:
ERROR: Cannot uninstall 'PyYAML'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.

Looking into it now.
@TomAugspurger
Copy link
Contributor Author

Ugh, moto is pinned to pyyaml 3.13? That's unfortunate...

@jreback jreback added this to the 0.25.0 milestone Jul 1, 2019
@jreback jreback added Blocker Blocking issue or pull request for an upcoming release Build Library building on various platforms labels Jul 1, 2019
TomAugspurger added a commit to TomAugspurger/pandas that referenced this issue Jul 1, 2019
@TomAugspurger
CI: Install moto from conda-forge
993c048 
Closes pandas-dev#27161
@TomAugspurger TomAugspurger mentioned this issue Jul 1, 2019
Merged
TomAugspurger added a commit that referenced this issue Jul 1, 2019
@TomAugspurger
CI: Install moto from conda-forge (#27163)
d054c03 
* CI: Install moto from conda-forge

Closes #27161
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
Blocker Blocking issue or pull request for an upcoming release Build Library building on various platforms
Projects
None yet
Milestone
0.25.0
Development

Successfully merging a pull request may close this issue.

CI: Install moto from conda-forge TomAugspurger/pandas
2 participants
@jreback @TomAugspurger