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@rcsb RCSB PDB

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    117 repositories

    • py-rcsb_workflow

      Public
      Python workflow entry points for database and search tools
      Python
      •
      Apache License 2.0
      •3•3•0•1•Updated Apr 18, 2025Apr 18, 2025

    • strucmotif-search

      Public
      Real-time structure motif searching in protein 3D structures using an inverted index strategy
      Java
      •
      MIT License
      •4•11•1•0•Updated Apr 18, 2025Apr 18, 2025

    • rcsb-embedding-model

      Public
      Embedding model for structure similarity search
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Apr 17, 2025Apr 17, 2025

    • mmcif_website

      Public
      PDBx/mmCIF Resource Site Static Content
      HTML
      •1•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • py-rcsb-api

      Public
      Python interface for RCSB.org API services
      Python
      •
      MIT License
      •4•24•4•1•Updated Apr 16, 2025Apr 16, 2025

    • rcsb-pecos-app

      Public
      TypeScript
      •
      MIT License
      •0•5•0•0•Updated Apr 16, 2025Apr 16, 2025

    • rcsb-stats

      Public
      Compute archive-wide statistics. Powered by RCSB Search API and BinaryCIF.
      statisticsprotein-data-bankprotein-structure-analysis
      Java
      •1•0•0•0•Updated Apr 16, 2025Apr 16, 2025

    • rcsb-chem-search

      Public
      Backend REST API supporting chemical similarity searches on RCSB PDB chemical components.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•0•0•1•Updated Apr 15, 2025Apr 15, 2025

    • py-mmcif

      Public
      mmCIF Core Access Library
      C++
      •
      Other
      •10•42•4•1•Updated Apr 15, 2025Apr 15, 2025

    • py-rcsb_utils_targets

      Public
      RCSB module containing methods for target data management
      Python
      •
      Apache License 2.0
      •0•0•2•0•Updated Apr 14, 2025Apr 14, 2025

    • py-rcsb_db

      Public
      RCSB Python Database Utility Classes
      Python
      •
      Other
      •5•11•5•2•Updated Apr 14, 2025Apr 14, 2025

    • py-rcsb_exdb

      Public
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Apr 14, 2025Apr 14, 2025

    • rcsb-saguaro-3d

      Public
      TypeScript
      •
      MIT License
      •7•28•1•0•Updated Apr 9, 2025Apr 9, 2025

    • rcsb-saguaro-app

      Public
      RCSB Saguaro 1D Feature Viewer Web App
      TypeScript
      •
      MIT License
      •6•8•0•1•Updated Apr 9, 2025Apr 9, 2025

    • rcsb-api-tools

      Public
      RCSB API javascript/TypeScript tools
      TypeScript
      •1•9•1•1•Updated Apr 9, 2025Apr 9, 2025

    • py-rcsb_mock-data

      Public
      Common mock data used to in testing RCSB Python modules
      3•0•0•0•Updated Apr 9, 2025Apr 9, 2025

    • rcsb-sequence-coordinates

      Public
      The RCSB PDB GraphQL service for amino/nucleic acid and identifier mapping
      JavaScript
      •
      MIT License
      •0•0•0•1•Updated Apr 8, 2025Apr 8, 2025

    • py-download-tester

      Public
      Simple utility to test the time to download files from RCSB websites
      Python
      •0•1•0•0•Updated Apr 8, 2025Apr 8, 2025

    • py-rcsb_utils_chemref

      Public
      Utilities for packaging PDB chemical reference data
      Python
      •
      Other
      •3•0•0•0•Updated Apr 8, 2025Apr 8, 2025

    • py-rcsb_utils_dictionary

      Public
      RCSB dictionary method utilities
      Python
      •
      Apache License 2.0
      •2•1•3•1•Updated Apr 7, 2025Apr 7, 2025

    • rcsb-idmapper

      Public
      IdMapper service extracted from Arches
      Java
      •
      The Unlicense
      •1•1•2•0•Updated Apr 7, 2025Apr 7, 2025

    • cpp-dict-pack

      Public
      RCSB MMCIF Dictionary Suite
      CMake
      •
      Other
      •0•2•1•0•Updated Apr 4, 2025Apr 4, 2025

    • py-rcsb_utils_repository

      Public
      RCSB repository data mangement utilities
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • rcsb-search-tools

      Public
      Request and parse data from the RCSB Search API
      TypeScript
      •0•3•0•0•Updated Apr 3, 2025Apr 3, 2025

    • rcsb-charts

      Public
      RCSB PDB charting library
      TypeScript
      •
      MIT License
      •0•1•0•0•Updated Apr 2, 2025Apr 2, 2025

    • rcsb-saguaro

      Public
      1D Feature Viewer
      TypeScript
      •
      MIT License
      •12•48•1•0•Updated Apr 2, 2025Apr 2, 2025

    • py-rcsb_utils_seq

      Public
      Utility methods for processing polymer sequence data.
      Python
      •
      Other
      •4•0•0•0•Updated Apr 2, 2025Apr 2, 2025

    • py-rcsb_utils_config

      Public
      Shared configuration option utilities
      Python
      •
      Other
      •3•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • py-rcsb_utils_ec

      Public
      Utilities for accessing Enzyme Commission classification data
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Apr 1, 2025Apr 1, 2025

    • py-rcsb_utils_insilico3d

      Public
      RCSB utilities for accessing in silico 3D models and metadata from external data resources.
      Python
      •
      Apache License 2.0
      •0•3•0•0•Updated Apr 1, 2025Apr 1, 2025