Repositories list

• dandi-archive

  Public
  EMBER - DANDI API server and Web app

  Python

  •13•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• dandi-infrastructure

  Public
  A repository to collect docs/issues on DANDI project infrastructure for Ember

  HCL

  •

  Apache License 2.0

  •6•0•0•0•Updated Jan 30, 2025Jan 30, 2025

• grandiso-rust

  Public
  Rust

  •

  Apache License 2.0

  •0•0•1•0•Updated Jan 29, 2025Jan 29, 2025

• neuroglancer

  Public
  WebGL-based viewer for volumetric data

  TypeScript

  •

  Apache License 2.0

  •304•1•0•1•Updated Jan 28, 2025Jan 28, 2025

• neuvue-app

  Public
  MICrONS Proofreading App

  JavaScript

  •

  Apache License 2.0

  •2•1•13•2•Updated Jan 24, 2025Jan 24, 2025

• bossdb-collab-notebooks

  Public
  Collection of public notebooks for all projects on BossDB

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•2•0•Updated Jan 24, 2025Jan 24, 2025

• npyjs

  Public
  Read numpy .npy files in JavaScript

  nodejsnumpy3d+ 4jhuapljavascriptnpynpy-files

  JavaScript

  •

  Apache License 2.0

  •22•81•8•2•Updated Jan 13, 2025Jan 13, 2025

• bossdb-rag-chatbot

  Public
  A Language Interface to the BossDB Ecosystem

  Python

  •

  Apache License 2.0

  •0•1•4•0•Updated Jan 13, 2025Jan 13, 2025

• neuromorpholib

  Public
  Python

  •

  Apache License 2.0

  •1•4•1•0•Updated Jan 10, 2025Jan 10, 2025

• grand-cypher

  Public
  Implementation of the Cypher language for searching NetworkX graphs

  networkxnetworkscypher+ 5grandpythonneo4jgraphgraph-database

  Python

  •

  Apache License 2.0

  •10•96•11•0•Updated Jan 10, 2025Jan 10, 2025

• neuvue-queue

  Public
  TypeScript

  •

  Apache License 2.0

  •0•1•4•0•Updated Dec 13, 2024Dec 13, 2024

• grand

  Public
  Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.

  sqlserverlessgraph+ 15graph-algorithmsgraphsneptunedynamodbnetworkxgraph-theorygraph-database+ 8

  Python

  •

  Apache License 2.0

  •7•102•7•0•Updated Dec 11, 2024Dec 11, 2024

• bossdb-kasthuri-challenge

  Public
  Segmentation challenge for the Kasthuri et. al 2015 dataset

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• dandi-cli

  Public
  DANDI command line client to facilitate common operations

  Python

  •

  Apache License 2.0

  •28•0•0•0•Updated Dec 5, 2024Dec 5, 2024

• grandlite

  Public
  A SQLite-like tool for querying graphs from the command-line using graph query languages in in-memory Python.

  neo4jcommand-linegraph+ 10sqlitegraphsin-memorygraph-databasecypheropencyphergraph-query+ 3

  Python

  •

  Apache License 2.0

  •0•6•1•0•Updated Dec 4, 2024Dec 4, 2024

• ffn

  Public
  Flood-Filling Networks for instance segmentation in 3d volumes.

  Python

  •

  Apache License 2.0

  •100•0•0•0•Updated Nov 13, 2024Nov 13, 2024

• pyreconstruct-download

  Public
  Tiny website + example code for downloading a subvolume for annotation in PyReconstruct

  Python

  •0•0•6•0•Updated Nov 12, 2024Nov 12, 2024

• neuVid

  Public
  Generates neuroscience videos from high-level descriptions using Blender.

  Python

  •

  Other

  •7•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• ndx-wearable-extension

  Public
  A template for creating Neurodata Extensions for wearable sensors

  Python

  •

  Other

  •10•0•0•0•Updated Sep 9, 2024Sep 9, 2024

• motifstudio

  Public
  motifssubgraph-isomorphismbossdb+ 2grand-graphsgrandiso

  Python

  •

  Apache License 2.0

  •0•1•7•0•Updated Sep 3, 2024Sep 3, 2024

• motifstudio-client

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Aug 21, 2024Aug 21, 2024

• dotmotif

  Public
  A performant, powerful query framework to search for network motifs

  neo4jnetworkxgraph-database+ 13connectomicsquery-languageconnectomemotif-discoverygraph-matchingmotifssubgraph-isomorphism+ 6

  Python

  •

  Apache License 2.0

  •9•84•4•0•Updated Aug 21, 2024Aug 21, 2024

• tamarind

  Public
  manage multiple ephemeral neo4j containers

  dockerdatabaseneo4j+ 3graphneo4j-databasegraph-database

  Python

  •

  Apache License 2.0

  •1•5•0•0•Updated Aug 20, 2024Aug 20, 2024

• grandiso-networkx

  Public
  Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

  networkgraphsnetwork-analysis+ 11connectomicsullmansubgraph-isomorphismnetwork-biologybossdbvf2grand-graphs+ 4

  Python

  •

  Apache License 2.0

  •10•58•6•1•Updated Aug 16, 2024Aug 16, 2024

• EMAnnotationSchemas

  Public
  Repository to hold schemas for annotations of volumetric imaging data focused on EM

  Python

  •

  MIT License

  •11•1•0•1•Updated Aug 15, 2024Aug 15, 2024

• PyChunkedGraph

  Public
  Data backend for fast proofreading of cell segmentations in connectomics datasets

  Python

  •

  Mozilla Public License 2.0

  •10•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• bossdb_cookbook

  Public
  The BossDB Cookbook is a collection of introductory notebooks and examples for interfacing with the BossDB system.

  Jupyter Notebook

  •0•5•1•1•Updated Jul 16, 2024Jul 16, 2024

• neuPrint-Build-Update

  Public
  Scripts to create files to build a neuPrint database

  Python

  •1•1•0•0•Updated Jul 11, 2024Jul 11, 2024

• neuprint-python

  Public
  Python client utilties for interacting with the neuPrint connectome analysis service

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •17•0•0•0•Updated Jul 9, 2024Jul 9, 2024

• neuvue-manage

  Public
  Resources and documentation to create and manage proofreading tasks on NeuVue

  Jupyter Notebook

  •

  Apache License 2.0

  •1•1•0•0•Updated Jun 7, 2024Jun 7, 2024