WEHI Research Computing and Data

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70 repositories

mondantic
Public
Converts Monday.com boards into Pydantic schemas and populates them
Python
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MIT License
•0•0•0•0•Updated Jan 30, 2025Jan 30, 2025
WEHI-ResearchComputing.github.io
Public
This is the website for the RCP at WEHI
student internships engagement jekyll markdown
HTML
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GNU General Public License v3.0
•2•3•1•0•Updated Jan 29, 2025Jan 29, 2025
FileSenderCli
Public
Improved command line interface and Python API for interacting with FileSender servers
command-line filesender
Python
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BSD 3-Clause "New" or "Revised" License
•1•5•4•0•Updated Jan 20, 2025Jan 20, 2025
nf-malaria-variant-analysis
Public
research nextflow-pipeline
R
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MIT License
•1•0•1•0•Updated Jan 13, 2025Jan 13, 2025
mtSwirl
Public
Python
•9•0•0•0•Updated Dec 20, 2024Dec 20, 2024
rag
Public
RAG toy example to build on. Copied from https://github.com/pixegami/rag-tutorial-v2
HTML
•1•0•8•1•Updated Dec 17, 2024Dec 17, 2024
DashAclEditor
Public
Dash GUI for editing Posix file acess control lists (ACLs)
Python
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GNU General Public License v3.0
•0•0•3•0•Updated Nov 13, 2024Nov 13, 2024
gnomad_methods
Public
Hail helper functions for the gnomAD project and Translational Genomics Group
Python
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MIT License
•29•0•0•0•Updated Oct 29, 2024Oct 29, 2024
gnomad-mitochondria
Public
A fork of Broad's Gnomad Mitochondria package for local HPC usage.
Python
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MIT License
•4•0•0•0•Updated Oct 29, 2024Oct 29, 2024
nf-alphafold
Public
nextflow-pipeline alphafold nf-tower
Nextflow
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Apache License 2.0
•0•3•0•0•Updated Oct 9, 2024Oct 9, 2024
DynamicDet
Public
[CVPR 2023] DynamicDet: A Unified Dynamic Architecture for Object Detection
Python
•14•0•0•0•Updated Sep 26, 2024Sep 26, 2024
nextflow-config
Public
Official Nextflow configuration file for WEHI
Nextflow
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MIT License
•0•0•0•0•Updated Sep 5, 2024Sep 5, 2024
RFdiffusion_WEHI
Public
Code for running RFdiffusion
Python
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Other
•378•0•0•0•Updated Aug 29, 2024Aug 29, 2024
RoseTTAFold-All-Atom
Public
Python
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Other
•123•0•0•0•Updated Aug 28, 2024Aug 28, 2024
cbioportal-docker-compose
Public
Run cBioPortal using Docker Compose
Shell
•38•0•0•0•Updated Aug 27, 2024Aug 27, 2024
ToolParameteriser
Public
Repository for Benchmarking Framework
Jupyter Notebook
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GNU General Public License v3.0
•0•0•7•0•Updated Aug 12, 2024Aug 12, 2024
REDMANE_nuxt
Public
Vue
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GNU General Public License v3.0
•1•1•1•0•Updated Jul 14, 2024Jul 14, 2024
nf-template
Public template
A nextflow template repository
Nextflow
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MIT License
•0•0•0•0•Updated Jul 12, 2024Jul 12, 2024
deepscatter-wehi-pubmed
Public
Visualisation of WEHI's pubmed landscape data using github.com/nomic-ai/deepscater
TypeScript
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Other
•63•0•0•0•Updated Jul 11, 2024Jul 11, 2024
tarprof
Public
Utilities for profiling Targets workflows
r targets targets-pipeline
R
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GNU General Public License v3.0
•0•1•1•0•Updated May 29, 2024May 29, 2024
EnvironmentModules
Public
A user friendly R front-end for the Environment Modules system. Offers a way to load and unload system packages on shared HPC (High Performance Computing) environments, through R.
environment-variables rstats environment-modules
R
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GNU General Public License v3.0
•0•2•6•0•Updated May 27, 2024May 27, 2024
WEHI-Alphafold
Public
Open source code for AlphaFold.
Python
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Apache License 2.0
•2.3k•0•0•0•Updated May 20, 2024May 20, 2024
Service_Workbench_Templates
Public
Templates for AWS Service Workbench from Relevance Lab
Shell
•13•0•0•0•Updated Apr 19, 2024Apr 19, 2024
container-recipes
Public
Container recipes created by the RCP team
research singularity-container apptainer-container
Roff
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MIT License
•0•0•0•0•Updated Mar 7, 2024Mar 7, 2024
ResidBenchmarks
Public
Benchmarking different ways to calculate residuals in R using a number of different packages.
0•0•0•0•Updated Dec 12, 2023Dec 12, 2023
Imaging-Getting-Started
Public
Making the HPC democratisable for Imaging researchers
Shell
•1•0•0•0•Updated Oct 23, 2023Oct 23, 2023
cbioportal-vcf2maf-pipeline
Public
cbioportal-vcf2maf-pipeline A pipeline, adapted from Genome Nexus annotation tools pipeline, to convert VCF files with somatic mutations into a single MAF for import into cBioPortal.
Shell
•0•0•0•0•Updated Oct 9, 2023Oct 9, 2023
stackoverflow-survey-subset
Public
Public data from stack overflow developer survey (2023) and iPython notebook to subset the data for healthcare academia.
Jupyter Notebook
•0•0•0•0•Updated Sep 28, 2023Sep 28, 2023
WEHI-llama2
Public
Inference code for LLaMA models
dl fine-tuning llms
Python
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Other
•9.7k•0•0•0•Updated Sep 21, 2023Sep 21, 2023
WEHI-llama2-recipes
Public
Examples and recipes for Llama 2 model
recipes dl llms
Python
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Other
•2.3k•0•0•0•Updated Sep 12, 2023Sep 12, 2023