Repositories list

• serve

  Public
  SciLifeLab Serve is a platform offering machine learning model serving, data science app hosting (Shiny, Gradio, Streamlit, Dash, etc.), and other tools to life science researchers affiliated with a Swedish research institute.

  JavaScript

  •

  Apache License 2.0

  •1•7•0•3•Updated Feb 4, 2025Feb 4, 2025

• serve-charts

  Public
  SciLifeLab Serve charts repository

  HTML

  •

  Other

  •1•1•0•2•Updated Feb 4, 2025Feb 4, 2025

• serve-images

  Public
  All files related to images used in Serve

  Python

  •1•1•2•1•Updated Feb 4, 2025Feb 4, 2025

• scilifelab-metadata-templates

  Public
  Python

  •

  MIT License

  •0•0•4•1•Updated Feb 4, 2025Feb 4, 2025

• dsw-appendix

  Public
  A static site which provides extra documentation for users of the main DSW system

  CSS

  •

  Other

  •1•1•0•2•Updated Feb 4, 2025Feb 4, 2025

• pathogens-portal-visualisations

  Public
  This repository holds the visualisations produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•5•0•0•Updated Feb 4, 2025Feb 4, 2025

• precision-medicine-portal-frontend

  Public
  React project for the frontend of the Precision Medicine Portal by DC Data Science Node

  TypeScript

  •

  Other

  •0•2•0•0•Updated Feb 4, 2025Feb 4, 2025

• pathogens-portal

  Public
  Swedish pathogens portal

  bootstrapmarkdownhugo+ 1covid-19

  HTML

  •

  MIT License

  •28•13•0•1•Updated Feb 4, 2025Feb 4, 2025

• blobserver

  Public
  Simple web app to server blobs (files containing any data) publicly. A file can be uploaded or updated by an authorized account, either via the web interface or via a script.

  Python

  •

  MIT License

  •0•2•0•9•Updated Feb 4, 2025Feb 4, 2025

• dds_web

  Public
  A cloud-based system for the delivery of data from SciLifeLab Facilities to their users (e.g. research group).

  pythonflask

  Python

  •

  Other

  •8•8•0•2•Updated Feb 4, 2025Feb 4, 2025

• form-manager

  Public
  A simple system for receiving form submissions.

  pythonflaskmongodb+ 2vuequasar-framework

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•5•Updated Feb 3, 2025Feb 3, 2025

• RDM-guidelines

  Public
  This is the repository for SciLifelab Research Data Management (RDM) guidelines, a central resource to provide information about data management.

  HTML

  •

  Other

  •4•5•11•2•Updated Feb 3, 2025Feb 3, 2025

• data.scilifelab.se

  Public
  SciLifeLab Data Platform

  HTML

  •

  MIT License

  •4•2•0•0•Updated Feb 3, 2025Feb 3, 2025

• genome-portal

  Public
  This is the repository for the Swedish Reference Genome Portal, a service facilitating access and discovery of genome data of non-model eukaryotic species studied in Sweden

  Python

  •

  MIT License

  •0•0•0•4•Updated Jan 31, 2025Jan 31, 2025

• node-pathogens-portal-demo

  Public
  A repo to have deployment related stuff for node-pathogens-portal demo site

  Dockerfile

  •

  MIT License

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• node-pathogens-portal

  Public
  A minimal/example hugo site for node pathogens portal

  MIT License

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• node-pathogens-portal-theme

  Public
  Hugo theme for pathogens portal

  HTML

  •

  MIT License

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• pathogens-portal-scripts

  Public
  This repository holds the scripts produced for the Swedish Pathogens Portal

  Python

  •

  MIT License

  •0•1•0•0•Updated Jan 28, 2025Jan 28, 2025

• data-platform-scripts

  Public
  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 27, 2025Jan 27, 2025

• precision-medicine-portal-backend

  Public
  Python

  •

  MIT License

  •0•4•0•0•Updated Jan 26, 2025Jan 26, 2025

• Anubis

  Public
  Proposal submission and review handling system.

  Python

  •

  MIT License

  •2•2•4•9•Updated Jan 26, 2025Jan 26, 2025

• omero-oauth_labsyspharm

  Public
  OMERO.web application to allow OAuth2 login to OMERO

  Python

  •

  GNU Affero General Public License v3.0

  •4•1•0•1•Updated Jan 22, 2025Jan 22, 2025

• dds_cli

  Public
  The command line interface for access to the Data Delivery System primarily developed by the SciLifeLab Data Centre.

  clickpythoncommand-line

  Python

  •

  MIT License

  •12•9•3•1•Updated Jan 21, 2025Jan 21, 2025

• serve-tutorials

  Public
  Tutorials for running applications on Scilifelab Serve.

  Jupyter Notebook

  •

  MIT License

  •1•6•0•0•Updated Jan 17, 2025Jan 17, 2025

• dc-dynamic

  Public
  Scripts related to Freya applications and Slack

  Python

  •1•2•0•0•Updated Jan 14, 2025Jan 14, 2025

• shiny-adhd-medication-sweden

  Public
  Dashboard visualising ADHD medication collection among girls and boys (0-19 year olds) in Sweden over time.

  rshinyshiny-apps

  R

  •

  MIT License

  •0•1•0•0•Updated Jan 14, 2025Jan 14, 2025

• streamlit-image-to-smiles

  Public
  Web app that allows users to predict SMILES for chemical structures depicted in images files.

  Python

  •

  MIT License

  •1•0•0•0•Updated Jan 9, 2025Jan 9, 2025

• OrderPortal

  Public
  A portal for orders (requests, project applications, etc) to a facility from its users.

  Python

  •

  MIT License

  •12•7•6•6•Updated Jan 7, 2025Jan 7, 2025

• maintenance-page

  Public
  Simple maintenance page running nginx in a Docker container

  HTML

  •

  MIT License

  •0•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• gradio-flower-classification

  Public
  Web app that allows users to input an image of a flower and get a prediction on what type of flower it is from a machine learning model.

  Python

  •

  MIT License

  •1•1•0•0•Updated Dec 3, 2024Dec 3, 2024