Repositories list

• DDRi_RNAseq

  Public
  RNAseq analysis repository for analysis

  R

  •0•0•0•0•Updated Jan 31, 2025Jan 31, 2025

• Decitabine-treatment

  Public
  A multiomics approach reveals RNA dynamics promote cellular sensitivity to DNA hypomethylation

  bioinformaticsdrug-discoverydna-methylation+ 1rna-modifications

  Jupyter Notebook

  •

  MIT License

  •1•1•0•0•Updated Jan 27, 2025Jan 27, 2025

• CanDI

  Public
  CanDI - A global cancer data integrator

  databasecancer-researchdepmap

  Jupyter Notebook

  •

  MIT License

  •4•6•8•0•Updated Jan 16, 2025Jan 16, 2025

• gbm_perturb

  Public
  In vivo perturb-seq in GBM models

  Jupyter Notebook

  •

  Apache License 2.0

  •0•2•0•0•Updated Sep 3, 2024Sep 3, 2024

• dCas9-fusions

  Public
  Python

  •0•0•0•0•Updated Apr 16, 2024Apr 16, 2024

• server_wiki

  Public
  Guidelines and tips for server usage

  1•0•0•0•Updated Jan 5, 2024Jan 5, 2024

• CRISPRi-dual-sgRNA-screens

  Public
  Python

  •

  MIT License

  •5•0•0•0•Updated Dec 11, 2023Dec 11, 2023

• ScreenPro2

  Public archive
  [This is an archived repository, see the current version in Arc Institute GitHub]

  crispr-analysiscrisprcrispr-cas9

  Python

  •

  MIT License

  •1•1•0•0•Updated Dec 11, 2023Dec 11, 2023

• dCas9-tiling

  Public
  Scripts for designing dCas9 tiling libraries

  Python

  •

  MIT License

  •0•0•0•0•Updated Nov 5, 2022Nov 5, 2022

• QuantSeq-FWD-with-UMIs

  Public
  QuantSeq FWD with UMIs RNA-seq analysis pipeline

  R

  •

  MIT License

  •1•0•0•0•Updated Feb 17, 2022Feb 17, 2022