Add CHANGELOG to rendered docs

CHANGELOG.md

@@ -1,232 +1 @@
-# Changelog
-All notable changes to this project will be documented in this file.
-
-The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
-and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
-
-<!--
-The rules for this file:
-  * entries are sorted newest-first.
-  * summarize sets of changes - don't reproduce every git log comment here.
-  * don't ever delete anything.
-  * keep the format consistent (79 char width, Y/M/D date format) and do not
-    use tabs but use spaces for formatting
-  * accompany each entry with github issue/PR number (Issue #xyz)
--->
-## v0.3.8 -- 2024-04-11
-
-### Authors
-- @lilyminium
-- @mattwthompson
-
-### Added
-- Helper methods for debugging (PR #111)
-
-### Changed
-- Moved from importlib_resources to plain importlib with 3.9+
-- Removed 3.9 compatibility for NAGL (PR #105)
-- Removed pyarrow as a core dependency (PR #113)
-
-
-
-## v0.3.7 -- 2024-04-05
-
-### Authors
-- @lilyminium
-- mattwthompson
-
-### Fixed
-- Refactored resonance enumeration to avoid generating whole
-  molecules with itertools.product where possible (PR #102, Issue #101)
-- Refactored NXMolGraph.in_edges to use np.where to speed code up (PR #102, Issue #101)
-- Removed Binder tooling (PR #99)
-
-
-## v0.3.6 -- 2024-03-22
-
-### Authors
-- @lilyminium
-
-### Fixed
-- Fixed typing of conformer generation from RDKit (PR #97)
-
-## v0.3.5 -- 2024-03-21
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @Yoshanuikabundi
-- @lilyminium
-
-### Fixed
-- Fixes to docs and examples (Issue #92, PR #73)
-
-
-## v0.3.4 -- 2024-02-15
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-- @mattwthompson
-
-### Fixed
-<!-- Bug fixes -->
-- Fixed CUDA launch error (Issue #81, PR #83)
-- Updated versioneer (PR #86)
-- Fixed batch distribution hardcoding (Issue #80, PR #82)
-- Fixed node and edge typing, adding DGL 2.0 compatibility (Issue #78, PR #79)
-
-
-## v0.3.3 - 2023-12-22
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-- @IAlibay
-
-### Fixed
-<!-- Bug fixes -->
-- Fixed OpenFF molecule conversion with toolkit wrappers (Issue #69, PR #71)
-- Bug report templates
-
-## v0.3.2 - 2023-10-26
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-
-### Changed
-- Added documentation link in README (PR #66, Issue #63)
-- Removed `capture_toolkit_warnings` usage in Molecule
-  creation as OpenFF Toolkit v0.14.4 no longer needs it,
-  and removed warnings filter from method (PR #65, Issue #64)
-
-## v0.3.1 - 2023-09-08
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-
-### Changed
-<!-- Changes in existing functionality -->
-- Guarded openff.toolkit imports (PR #61, Issue #56)
-
-## v0.3.0 - 2023-08-29
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-- @mattwthompson
-
-### Reviewers
-- @lilyminium
-
-### Added
-- Codecov coverage (PR #43)
-- Multiple target objectives and configuratin files (PR #45)
-- Support for pydantic v2 (PR #46)
-- Added `ChemicalDomain` and model versioning (PR #54)
-
-
-### Fixed
-<!-- Bug fixes -->
-- pytest runs (PR #44)
-- documentation badge and links (PR #51, #52)
-
-### Changed
-<!-- Changes in existing functionality -->
-- Major refactor to move to using Arrow databases (PR #45, PR #48)
-- Removed importing `OFFMolecule` in favour of `Molecule` (PR #50, Issue #13)
-
-### Removed
-- Old `_app` and `_cli` utilities that were not well tested
-  are not supported in refactor (PR #49)
-
-## v0.2.3 - 2023-07-05
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-- @yoshanuikabundi
-
-### Reviewers
-- @lilyminium
-
-### Added
-- Link to OpenFF install guide (PR #37)
-
-### Fixed
-<!-- Bug fixes -->
-- Versioneer version prefix (PR #42)
-
-### Changed
-<!-- Changes in existing functionality -->
-- Update examples for central examples page (PR #40)
-
-## v0.2.2 - 2023-03-29
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-- @yoshanuikabundi
-
-### Reviewers
-- @lilyminium
-
-### Added
-- `GNNModel.load` (PR #26)
-- `GNNModel.save` function (PR #29)
-- General documentation (PR #21, PR #33)
-- Documentation of creation of custom features (PR #36)
-
-### Fixed
-<!-- Bug fixes -->
-- Fix edge ordering in NXMol graph (Issue #28, PR #34)
-
-### Changed
-<!-- Changes in existing functionality -->
-- Migrate away from pkg_resources to importlib_resources (PR #35)
-- Expose base classes and hide metaclasses (PR #32)
-- Update examples for central examples page (PR #40)
-
-## v0.2.1 - 2023-03-02
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @lilyminium
-
-### Reviewers
-- @mattwthompson
-
-### Added
-- `GNNModel.load` function (PR #26)
-- `convolution_dropout` and `readout_dropout` keywords to GNNModel (PR #26)
-
-### Fixed
-<!-- Bug fixes -->
-- Versioneer `__version__` string (PR #25)
-
-## v0.2.0 - 2023-02-05
-
-### Authors
-<!-- GitHub usernames of contributors to this release -->
-- @sboothroyd
-- @jthorton
-- @mattwthompson
-- @lilyminium
-
-### Added
-<!-- New added features -->
-- New toolkit wrappers (PR #14, PR #16)
-
-### Fixed
-<!-- Bug fixes -->
-
-### Changed
-<!-- Changes in existing functionality -->
-- Refactored code so DGL is not required for install or model inference (PR #23)
-
-### Deprecated
-<!-- Soon-to-be removed features -->
-
-### Removed
-<!-- Removed features -->
+See docs/CHANGELOG.md