[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

ome_zarr/format.py

@@ -376,15 +376,15 @@ def init_store(self, path: str, mode: str = "r") -> FSStore:
             mode=mode,
             **kwargs,
         )  # TODO: open issue for using Path
-        print("Created v0.5 store %s(%s, %s, %s)" % (cls, path, mode, kwargs))
+        print("Created v0.5 store {}({}, {}, {})".format(cls, path, mode, kwargs))
         return store
 
     def matches(self, metadata: dict) -> bool:
         """Version 0.5+ defined by version_key (URL)"""
         version = self._get_metadata_version(metadata)
         LOGGER.debug("%s matches %s?", self.version, version)
         return version == self.version_key
-    
+
     def _get_metadata_version(self, metadata: dict) -> Optional[str]:
         """
         For version 0.5+ we use the NGFF_URL_0_5 key

ome_zarr/io.py

@@ -10,7 +10,7 @@
 from urllib.parse import urljoin
 
 import dask.array as da
-from zarr import Group, Array, open
+from zarr import Array, Group, open
 
 # from zarr.v2.storage import FSStore
 from zarr.abc.store import Store
@@ -109,19 +109,19 @@ def __init_metadata(self) -> None:
         try:
             # NB: zarr_format not supported in Group.open() or Array.open() yet
             # We want to use zarr_format=None to handle v2 or v3
-            zarr_group = Group.open(self.__store)  #, zarr_format=None)
+            zarr_group = Group.open(self.__store)  # , zarr_format=None)
             self.zgroup = zarr_group.metadata.to_dict()
             self.__metadata = self.zgroup
         except FileNotFoundError:
             # group doesn't exist yet, try array
             try:
-                zarr_array = Array.open(self.__store)  #, zarr_format=None)
+                zarr_array = Array.open(self.__store)  # , zarr_format=None)
                 self.zarray = zarr_array.metadata.to_dict()
                 self.__metadata = self.zarray
             except (ValueError, KeyError, FileNotFoundError):
                 # exceptions raised may change here?
                 self.__exists = False
-                
+
         # self.zarray: JSONDict = await self.get_json(".zarray")
         # self.zgroup: JSONDict = await self.get_json(".zgroup")
         # v3_json = await self.get_json("zarr.json")
@@ -212,9 +212,9 @@ async def get_json(self, subpath: str) -> JSONDict:
         All other exceptions log at the ERROR level.
         """
         try:
-            print('get_json', subpath)
+            print("get_json", subpath)
             data = await self.__store.get(subpath)
-            print('data', data)
+            print("data", data)
 
             if not data:
                 return {}

ome_zarr/reader.py

@@ -9,7 +9,7 @@
 import numpy as np
 
 from .axes import Axes
-from .format import format_from_version, NGFF_URL_0_5
+from .format import NGFF_URL_0_5, format_from_version
 from .io import ZarrLocation
 from .types import JSONDict
 
@@ -179,7 +179,11 @@ def lookup(self, key: str, default: Any) -> Any:
 
         # Handle zarr V3 where everything is under "attributes"
         if NGFF_URL_0_5 in self.zarr.root_attrs.get("attributes", {}):
-            return self.zarr.root_attrs.get("attributes", {}).get(NGFF_URL_0_5, {}).get(key, default)
+            return (
+                self.zarr.root_attrs.get("attributes", {})
+                .get(NGFF_URL_0_5, {})
+                .get(key, default)
+            )
 
         return self.zarr.root_attrs.get(key, default)
 
@@ -279,7 +283,9 @@ def matches(zarr: ZarrLocation) -> bool:
         if zarr.zgroup:
             if "multiscales" in zarr.root_attrs:
                 return True
-            if "multiscales" in (zarr.root_attrs.get("attributes", {}).get(NGFF_URL_0_5, {})):
+            if "multiscales" in (
+                zarr.root_attrs.get("attributes", {}).get(NGFF_URL_0_5, {})
+            ):
                 return True
         return False
 

ome_zarr/writer.py

@@ -265,7 +265,13 @@ def write_multiscale(
 
         else:
             # We create the array and write data to it immediately...
-            a = group.create_array(str(path), chunks=chunks_opt, shape=data.shape, dtype=data.dtype, **options)
+            a = group.create_array(
+                str(path),
+                chunks=chunks_opt,
+                shape=data.shape,
+                dtype=data.dtype,
+                **options,
+            )
             # These 2 lines are equivalent to e.g. a[:,:] = data (for any number of dimensions)
             s = [np.s_[:]] * len(data.shape)
             a[tuple(s)] = data