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Standardise annotation property: abbreviation #2150

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ghost opened this issue Sep 14, 2023 · 0 comments · Fixed by #2159
Closed

Standardise annotation property: abbreviation #2150

ghost opened this issue Sep 14, 2023 · 0 comments · Fixed by #2159
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maintenance Simple fixes identified during maintenance reviews or while working on other issues synonym

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ghost commented Sep 14, 2023 •
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There are several variations of the synonym_type_property abbreviation in CL and UBERON:

http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION with no asserted rdfs:label in CL
http://purl.obolibrary.org/obo/uberon/core#ABBREVIATION with label 'abbreviation' in UBERON
http://purl/obolibrary.org/obo/cl#abbreviation with label 'abbreviation' in CL
http://purl/obolibrary.org/obo/cl#abbreviation with no asserted rdfs:label in UBERON

As part of an effort to standardise synonym_type_properties in OBO ontologies (like #2143), this ticket proposes to delete the above annotation properties and replace all with the OMO term OMO:0003000 abbreviation.

This ticket will address native instances of the property in CL.
A separate ticket will address native instances in UBERON.
@ghost ghost added synonym maintenance Simple fixes identified during maintenance reviews or while working on other issues labels Sep 14, 2023
@ghost ghost self-assigned this Sep 14, 2023
@cthoyt cthoyt mentioned this issue Sep 23, 2023
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ghost pushed a commit that referenced this issue Sep 25, 2023
Addresses #2150 Standardise abbreviation property
1830419
@ghost ghost mentioned this issue Sep 25, 2023
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@ghost ghost linked a pull request Sep 25, 2023 that will close this issue
Addresses #2150 Standardise annotation property: abbreviation #2159
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@ghost ghost mentioned this issue Sep 25, 2023
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@ghost ghost closed this as completed in #2159 Sep 26, 2023
ghost pushed a commit that referenced this issue Sep 26, 2023
Merge pull request #2159 from obophenotype/2150-replace_abbreviation_…
0734405 
…syn_type_prop

Addresses #2150 Standardise annotation property: abbreviation
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Addresses #2150 Standardise annotation property: abbreviation obophenotype/cell-ontology
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