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bump to v3.2.0 #3427

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Jan 27, 2025
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2 changes: 1 addition & 1 deletion .gitpod.yml
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
image: nfcore/gitpod:dev
image: nfcore/gitpod:latest
tasks:
- name: install current state of nf-core/tools and setup pre-commit
command: |
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4 changes: 1 addition & 3 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
@@ -1,14 +1,12 @@
# nf-core/tools: Changelog

## v3.2.0dev
## [v3.2.0 - Pewter Pangolin](https://github.com/nf-core/tools/releases/tag/3.2.0) - [2025-01-27]

### Template

- Remove automated release tweets ([#3419](https://github.com/nf-core/tools/pull/3419))
- Update template components ([#3426](https://github.com/nf-core/tools/pull/3426))

### Linting

### Modules

- Modules created in pipelines "local" dir now use the full template ([#3256](https://github.com/nf-core/tools/pull/3256))
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6 changes: 3 additions & 3 deletions nf_core/pipeline-template/docs/output.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
{% if fastqc -%}

- [FastQC](#fastqc) - Raw read QC{% endif %}
{%- if multiqc -%}
{%- if multiqc %}
- [MultiQC](#multiqc) - Aggregate report describing results and QC from the whole pipeline
{%- endif %}
- [Pipeline information](#pipeline-information) - Report metrics generated during the workflow execution
Expand All @@ -34,7 +34,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
</details>

[FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) gives general quality metrics about your sequenced reads. It provides information about the quality score distribution across your reads, per base sequence content (%A/T/G/C), adapter contamination and overrepresented sequences. For further reading and documentation see the [FastQC help pages](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/Help/).
{%- endif -%}
{%- endif %}

{% if multiqc -%}

Expand All @@ -53,7 +53,7 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and processes d
[MultiQC](http://multiqc.info) is a visualization tool that generates a single HTML report summarising all samples in your project. Most of the pipeline QC results are visualised in the report and further statistics are available in the report data directory.

Results generated by MultiQC collate pipeline QC from supported tools e.g. FastQC. The pipeline has special steps which also allow the software versions to be reported in the MultiQC output for future traceability. For more information about how to use MultiQC reports, see <http://multiqc.info>.
{%- endif -%}
{%- endif %}

### Pipeline information

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2 changes: 1 addition & 1 deletion setup.py
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

from setuptools import find_packages, setup

version = "3.2.0dev"
version = "3.2.0"

with open("README.md") as f:
readme = f.read()
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