update snapshots

nf-core · Oct 6, 2023 · 56e5143 · 56e5143
1 parent bf27df9
commit 56e5143
Show file tree

Hide file tree

Showing 10 changed files with 105 additions and 9 deletions.
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -15,7 +15,7 @@ on:
 
 env:
   NXF_ANSI_LOG: false
-  NFTEST_VER: "0.8.0-rc2"
+  NFTEST_VER: "0.8.0"
 
 concurrency:
   group: "${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }}"

diff --git a/.../sra/tests/sra_default_parameters.nf.test → workflows/sra/tests/main.nf.test b/.../sra/tests/sra_default_parameters.nf.test → workflows/sra/tests/main.nf.test
diff --git a/...tests/sra_default_parameters.nf.test.snap → workflows/sra/tests/main.nf.test.snap b/...tests/sra_default_parameters.nf.test.snap → workflows/sra/tests/main.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T12:00:37.501679"
+        "timestamp": "2023-10-06T12:18:32.149462"
     }
 }
diff --git a/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap b/workflows/sra/tests/sra_custom_ena_metadata_fields.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,e8a7d8effe4af1d999dc26cf92cf6621"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,b1c25951b237552448e878f7c9dc4235",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,d161b1a26b415a61064d8c558c9695c5"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T11:58:11.85816"
+        "timestamp": "2023-10-06T12:10:32.762201"
     }
 }
diff --git a/workflows/sra/tests/sra_force_sratools_download.nf.test.snap b/workflows/sra/tests/sra_force_sratools_download.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -24,6 +30,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
                 ],
@@ -36,6 +48,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T12:08:28.465466"
+        "timestamp": "2023-10-06T12:24:57.695874"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_atacseq.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,46752dd6abac80b59573910f7ce4babe"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T11:53:25.411769"
+        "timestamp": "2023-10-06T12:03:19.401141"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_rnaseq.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,69117245b73776d6e4daecdbfdff9767"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T12:03:02.485911"
+        "timestamp": "2023-10-06T12:14:02.500312"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_taxprofiler.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,0705e78609390cc464c2fb10051178bc"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T11:55:48.759498"
+        "timestamp": "2023-10-06T12:07:01.184728"
     }
 }
diff --git a/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap b/workflows/sra/tests/sra_nf_core_pipeline_viralrecon.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,45e4a369df2d3af023b8622aa3f6d5a8",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
@@ -25,6 +31,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,c1104c2edfc663b103f79b0551450192"
                 ],
@@ -38,6 +50,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T11:50:52.373496"
+        "timestamp": "2023-10-06T11:59:31.7356"
     }
 }
diff --git a/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap b/workflows/sra/tests/sra_skip_fastq_download.nf.test.snap
@@ -12,6 +12,12 @@
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
                 "3": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
+                "4": [
                     "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9",
                     "versions.yml:md5,9b17045ca8bdc272cb3f9d349a81d206",
                     "versions.yml:md5,b21338b74b9a8fe0c7a114f7686c07cd",
@@ -23,6 +29,12 @@
                 "mappings": [
                     "id_mappings.csv:md5,a18766d39f6b2239163b4ef00eeaf342"
                 ],
+                "sample_mappings": [
+                    [
+                        "multiqc_config.yml:md5,bb99e81ddd360988338c10ecbdbce65a",
+                        "versions.yml:md5,1496d1cbc9041e07ab8a0c25f0b054d9"
+                    ]
+                ],
                 "samplesheet": [
                     "samplesheet.csv:md5,b1636e896008b96044d352a0757a390b"
                 ],
@@ -34,6 +46,6 @@
                 ]
             }
         ],
-        "timestamp": "2023-09-25T11:03:28.968158"
+        "timestamp": "2023-10-06T12:18:48.477246"
     }
 }