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Add dataset name shortcuts #1330

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merged 5 commits into from
Dec 7, 2023
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@ivan-aksamentov ivan-aksamentov commented Dec 7, 2023

Sibling PR in data: nextstrain/nextclade_data#116 (can be merged independently; no breakage)

This allows to use shortcuts instead of full paths for datasets containing shortcuts array in their pathogen.json:

CLI example:

nextclade run --dataset-name='sc2'
nextclade dataset list --name='sc2'
nextclade dataset list --search='sc2'
nextclade dataset get --name='sc2'

Web example:

https://nextclade-git-feat-dataset-name-shortcuts-nextstrain.vercel.app/?dataset-name=sc2

(these examples assume that there is a dataset which defines a shortcut sc2; in PR nextstrain/nextclade_data#116 this is nextstrain/sars-cov-2/MN908947)

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@ivan-aksamentov ivan-aksamentov merged commit d3e8b47 into master Dec 7, 2023
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@ivan-aksamentov ivan-aksamentov deleted the feat/dataset-name-shortcuts branch December 7, 2023 12:29
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