Code

Compute pairwise distances#278

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lochhh merged 26 commits intomainneuroinformatics-unit/movement:mainfrom distance-metricsneuroinformatics-unit/movement:distance-metricsCopy head branch name to clipboardOct 29, 2024

+540-3

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Commits on Oct 29, 2024

• Draft inter-individual distances

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• Return vector norm in compute_interindividual_distances

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• Add compute_interkeypoint_distances

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• Refactor pairwise distances tests

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• Use scipy.spatial.distance.cdist

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• Add examples to docstrings

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• Rename variables

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• Update test function args + fix indentation

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• Handle scalar and 1d dims

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• Handle missing core_dim

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• Refactor cdist and tests

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• Fix docstrings

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• Reorder functions + cleanup docs

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• Reduce pairwise distances functions

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• Mention examples of available distance metrics

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• Update docstrings

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• Require pairs in compute_pairwise_distances

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• Raise error if there are no pairs to compute distances for

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• Rename core_dim to labels_dim

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• Spell out expected pairs in test

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• Merge old kinematics file changes into new

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• Rename core_dim to labels_dim in tests

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• Validate dims in compute_pairwise_distances

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