130 neat crashes with target bed file 500 lines #131
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joshfactorial
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Fixing a bug that caused the memory to grow out of control while processing a bed file. The issue was we were passing the entire reference dict to the bed function, which was causing python to duplicate the dictionary. Instead, we created a counts dictionary, which we incidentally needed later anyway. This should simplify looking up lengths of chromosomes and memory size. We will investigate further to see if there are more gains to be found here.