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Python wrapper import error #4
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Hi Tianhao, I was having the same issue, oco_noise_level.py was added in the last commit: I reverted that last commit and the python imports worked. |
Hi Rocheseb,
Have you run the Python wrapper successfully? If so, do you have any idea about how I can properly set up the configuration in python? Thanks! |
Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions
commit 359617c Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095b. commit bb5f0ed Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099. commit 8fba099 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095b Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca0873 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b0361 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3da Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c297310 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd478 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed2 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28e Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c73177 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d772163 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f90 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f1 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 4526164 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef24 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aa Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf3 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66d Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d4 Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861b Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e2 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a381 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668a Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816 Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788 Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87e Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946 Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd5 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db4504 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8e Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015 Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4e Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479df Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b275 Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835 Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b824 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e3942 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949d Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9 Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2.
Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions
commit 359617c Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095b. commit bb5f0ed Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099. commit 8fba099 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095b Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca0873 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b0361 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3da Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c297310 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd478 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed2 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28e Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c73177 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d772163 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f90 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f1 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 4526164 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef24 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aa Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf3 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66d Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d4 Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861b Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e2 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a381 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668a Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816 Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788 Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87e Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946 Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd5 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db4504 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8e Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015 Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4e Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479df Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b275 Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835 Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b824 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e3942 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949d Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9 Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2.
commit 6b31483188962009043fbeafbcfbeb2dae2dafbb Merge: c6f4ece 4f8d8c1 Author: Mike <[email protected]> Date: Fri Sep 15 14:56:28 2023 -0700 Merge remote-tracking branch 'github/master' commit c6f4ece527c26d10cede1aa1210451b8f5d72707 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri Sep 15 21:56:10 2023 +0000 Match git tag B11.0.31_rc3 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.31_rc3@39805 816d28dc-4d21-0410-b126-a42eb7b27919 commit e35423eac94b179371950a50a50340b4cdb00dee Merge: 7e67375 a9f0958 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri Sep 15 21:54:51 2023 +0000 Update to B11.0.31_rc3 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@39804 816d28dc-4d21-0410-b126-a42eb7b27919 commit a9f0958763c83e36fb75a26fdf03b1f87a7fb750 Author: Mike <[email protected]> Date: Fri Sep 15 14:53:15 2023 -0700 Squashed commit of the following: commit 4f8d8c1fcd00766850dc36ecf82f9efaaedd16bc Author: Mike <[email protected]> Date: Fri Sep 15 11:54:38 2023 -0700 Update expected results commit 03ca8ad6eee95603a4e5ce3f12951893054df18e Author: Mike <[email protected]> Date: Fri Sep 1 11:53:14 2023 -0700 Change OCO3 configuration to use 3 EOFs only for band 1 and 2 (previously we had 4 for all bands). commit 1072d30757782b98a5f00bd1c313661e91504f7a Author: Mike <[email protected]> Date: Fri Sep 1 11:17:17 2023 -0700 Use /home/odell/OCO3_results/b11/qts/eof/B11027_QTS-geosit/eofs/oco3_B11_QTS-geosit_oceanG_alt1_falt1_sorted_L2.h5 from Chris as update for OCO3 EOFs commit 7e9c3ea08e026fce1a510a2568c8b918a4daee75 Author: Mike <[email protected]> Date: Tue Jul 18 16:08:06 2023 -0700 Missed updating the pleiades module in setup_fp_env.sh.in commit ad23b891f72f278f1f926261c062236887b87f3e Author: Mike <[email protected]> Date: Tue Jul 18 14:58:27 2023 -0700 Fix typo in last checkin commit d04ec979ba32aac93177db11e68596fe23f72b63 Author: Mike <[email protected]> Date: Tue Jul 18 14:50:32 2023 -0700 Updates as we work through Pleiades build issues. commit e2848992f9835b76fede719397e286af42c2e310 Author: Mike <[email protected]> Date: Tue Jul 18 12:20:00 2023 -0700 Updates as we work through Pleiades build issues. commit 4f8d8c1fcd00766850dc36ecf82f9efaaedd16bc Author: Mike <[email protected]> Date: Fri Sep 15 11:54:38 2023 -0700 Update expected results commit 03ca8ad6eee95603a4e5ce3f12951893054df18e Author: Mike <[email protected]> Date: Fri Sep 1 11:53:14 2023 -0700 Change OCO3 configuration to use 3 EOFs only for band 1 and 2 (previously we had 4 for all bands). commit 1072d30757782b98a5f00bd1c313661e91504f7a Author: Mike <[email protected]> Date: Fri Sep 1 11:17:17 2023 -0700 Use /home/odell/OCO3_results/b11/qts/eof/B11027_QTS-geosit/eofs/oco3_B11_QTS-geosit_oceanG_alt1_falt1_sorted_L2.h5 from Chris as update for OCO3 EOFs commit 7e9c3ea08e026fce1a510a2568c8b918a4daee75 Author: Mike <[email protected]> Date: Tue Jul 18 16:08:06 2023 -0700 Missed updating the pleiades module in setup_fp_env.sh.in commit ad23b891f72f278f1f926261c062236887b87f3e Author: Mike <[email protected]> Date: Tue Jul 18 14:58:27 2023 -0700 Fix typo in last checkin commit d04ec979ba32aac93177db11e68596fe23f72b63 Author: Mike <[email protected]> Date: Tue Jul 18 14:50:32 2023 -0700 Updates as we work through Pleiades build issues. commit e2848992f9835b76fede719397e286af42c2e310 Author: Mike <[email protected]> Date: Tue Jul 18 12:20:00 2023 -0700 Updates as we work through Pleiades build issues. commit c6a495524de1346a426786d5cc40dd32a7d268bb Merge: c1dc51e cf03986 Author: Mike <[email protected]> Date: Fri May 12 15:28:51 2023 -0700 Merge remote-tracking branch 'github/master' commit c1dc51e02c4397b3d7cf840f32c90d2b862413dd Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri May 12 22:28:33 2023 +0000 Match git tag B11.0.33_rc1 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.33_rc1@39518 816d28dc-4d21-0410-b126-a42eb7b27919 commit 7e67375210bf1f1c0dd7e5a05f8a8453205b797b Merge: 2add840 279e0d1 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri May 12 22:26:52 2023 +0000 Update to B11.0.33_rc1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@39517 816d28dc-4d21-0410-b126-a42eb7b27919 commit 279e0d1e2cddf4c811b6877a1e5038bc418f0464 Author: Mike <[email protected]> Date: Fri May 12 15:25:12 2023 -0700 Squashed commit of the following: commit cf0398676c0b6c632528a6e16ee4f897741c353f Author: Mike <[email protected]> Date: Fri May 12 12:49:13 2023 -0700 Update version number to 11.0.31. commit 00dd0ccdbb9dcc97b258b929c71ce7f9d9d82e25 Author: Mike <[email protected]> Date: Sun Apr 30 15:52:42 2023 -0700 Fix the GSL solvers for the newer version of GSL. I don't think these actually get used for anything right now, but no reason not to fix everything so the code is available if needed. commit 9ebf212cc2cd6bd43e955a6f8076d0c1536712da Author: Mike <[email protected]> Date: Sun Apr 30 15:51:35 2023 -0700 The new version of blitz doesn't have IO for 5d arrays. We could put this in or work around somehow, but we only have one test that needs this. Just commend out the test. If we ever have an issue with this, we can come back and actually fix this. But it doesn't currently seem like it is worth the effort. commit f8a02ac98ed3d23b8e1cf3216842c2ad92201367 Author: Mike <[email protected]> Date: Sun Apr 30 12:16:35 2023 -0700 Update a number of input/expected results for the newer format of blitz arrays. commit 3495e70cdad2576763259f2434c4add963c36117 Author: Mike <[email protected]> Date: Fri Apr 28 16:42:03 2023 -0700 Fix a number of unit test input/output to use the newer form of blitz array io. No actual changes, just format update. commit efbcb0acb21039408bc4b48e906789a6e8154930 Author: Mike <[email protected]> Date: Fri Apr 28 16:41:19 2023 -0700 Fix a real bug, pressure_level isn't in general the same object returned each time so the logic in interpolate_to_grid is wrong. This has been the the code for a long time, I'm not sure why we never ran into it. commit 889a89f809365aa1a84692e9d44f44f7f112fe83 Author: Mike <[email protected]> Date: Fri Apr 28 14:44:49 2023 -0700 Fix a number of warnings we got with the newer, stricter compilers on redhat 8. None of these looked serious, but fix so the warnings don't hide possibly important warnings. commit 7dca909d9fbe58427d29903a45222fd99e881433 Author: Mike <[email protected]> Date: Tue Apr 18 09:17:19 2023 -0700 Fix a number of unit tests, still have a few failing. commit 20c0f8246627a4d28aafbafc38eae5e4d83a7e1c Author: Mike <[email protected]> Date: Mon Apr 17 15:49:02 2023 -0700 Replace usage of auto_ptr in luabind with unique_ptr commit d58f1f253260f9fa945f7f2c61d2f7cd7a8975cb Author: Mike <[email protected]> Date: Mon Apr 17 15:16:39 2023 -0700 Update the various thirdparty libraries. We don't necessarily need the new versions, but stuff was really out of date. We want to catch anything that might have been fixed for oracle linux 8. commit c7aae59bdc069170b7e0ae4e4114a3a5ed0d2941 Author: Mike <[email protected]> Date: Mon Apr 17 15:06:32 2023 -0700 Update to more recent version of boost commit bbf36c03836b8c26bd6700d9602c27d05f044128 Author: Mike <[email protected]> Date: Mon Apr 17 14:18:22 2023 -0700 Update expected test results. commit 788f82984a6656361c054d2ec150d73198395779 Author: Mike <[email protected]> Date: Mon Apr 17 12:46:41 2023 -0700 Fix unit test, needed to select right version of overloaded cos to use in integration test. commit 4409733a4df6801b149fb9dafaa89d8615162665 Author: Mike <[email protected]> Date: Mon Apr 17 12:22:18 2023 -0700 Update commonlib version for the one build on oracle 8. commit cf0398676c0b6c632528a6e16ee4f897741c353f Author: Mike <[email protected]> Date: Fri May 12 12:49:13 2023 -0700 Update version number to 11.0.31. commit 00dd0ccdbb9dcc97b258b929c71ce7f9d9d82e25 Author: Mike <[email protected]> Date: Sun Apr 30 15:52:42 2023 -0700 Fix the GSL solvers for the newer version of GSL. I don't think these actually get used for anything right now, but no reason not to fix everything so the code is available if needed. commit 9ebf212cc2cd6bd43e955a6f8076d0c1536712da Author: Mike <[email protected]> Date: Sun Apr 30 15:51:35 2023 -0700 The new version of blitz doesn't have IO for 5d arrays. We could put this in or work around somehow, but we only have one test that needs this. Just commend out the test. If we ever have an issue with this, we can come back and actually fix this. But it doesn't currently seem like it is worth the effort. commit f8a02ac98ed3d23b8e1cf3216842c2ad92201367 Author: Mike <[email protected]> Date: Sun Apr 30 12:16:35 2023 -0700 Update a number of input/expected results for the newer format of blitz arrays. commit 3495e70cdad2576763259f2434c4add963c36117 Author: Mike <[email protected]> Date: Fri Apr 28 16:42:03 2023 -0700 Fix a number of unit test input/output to use the newer form of blitz array io. No actual changes, just format update. commit efbcb0acb21039408bc4b48e906789a6e8154930 Author: Mike <[email protected]> Date: Fri Apr 28 16:41:19 2023 -0700 Fix a real bug, pressure_level isn't in general the same object returned each time so the logic in interpolate_to_grid is wrong. This has been the the code for a long time, I'm not sure why we never ran into it. commit 889a89f809365aa1a84692e9d44f44f7f112fe83 Author: Mike <[email protected]> Date: Fri Apr 28 14:44:49 2023 -0700 Fix a number of warnings we got with the newer, stricter compilers on redhat 8. None of these looked serious, but fix so the warnings don't hide possibly important warnings. commit 7dca909d9fbe58427d29903a45222fd99e881433 Author: Mike <[email protected]> Date: Tue Apr 18 09:17:19 2023 -0700 Fix a number of unit tests, still have a few failing. commit 20c0f8246627a4d28aafbafc38eae5e4d83a7e1c Author: Mike <[email protected]> Date: Mon Apr 17 15:49:02 2023 -0700 Replace usage of auto_ptr in luabind with unique_ptr commit d58f1f253260f9fa945f7f2c61d2f7cd7a8975cb Author: Mike <[email protected]> Date: Mon Apr 17 15:16:39 2023 -0700 Update the various thirdparty libraries. We don't necessarily need the new versions, but stuff was really out of date. We want to catch anything that might have been fixed for oracle linux 8. commit c7aae59bdc069170b7e0ae4e4114a3a5ed0d2941 Author: Mike <[email protected]> Date: Mon Apr 17 15:06:32 2023 -0700 Update to more recent version of boost commit bbf36c03836b8c26bd6700d9602c27d05f044128 Author: Mike <[email protected]> Date: Mon Apr 17 14:18:22 2023 -0700 Update expected test results. commit 788f82984a6656361c054d2ec150d73198395779 Author: Mike <[email protected]> Date: Mon Apr 17 12:46:41 2023 -0700 Fix unit test, needed to select right version of overloaded cos to use in integration test. commit 4409733a4df6801b149fb9dafaa89d8615162665 Author: Mike <[email protected]> Date: Mon Apr 17 12:22:18 2023 -0700 Update commonlib version for the one build on oracle 8. commit 85b39aac8096d3387c1569d2cb9a7ceedcd48e82 Merge: b899d63 359617c Author: Mike <[email protected]> Date: Wed Feb 9 15:06:53 2022 -0800 Merge remote-tracking branch 'github/master' commit b899d63642de01017457f5b162d780a3d8b3d000 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Wed Feb 9 23:06:27 2022 +0000 Match git tag B11.0.05_rc2 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.05_rc2@38123 816d28dc-4d21-0410-b126-a42eb7b27919 commit 2add8407d40f26a58ccfe778e3ceef96dd0e5e12 Merge: b07bb93 1b0490f Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Wed Feb 9 23:04:40 2022 +0000 Update to B11.0.05_rc2 git tag version. git-svn-id: https://svn/oco/alg/level_2/trunk@38122 816d28dc-4d21-0410-b126-a42eb7b27919 commit 1b0490fdf85981366e19e5ad3b2dc95cbfa49eef Author: Mike <[email protected]> Date: Wed Feb 9 14:36:45 2022 -0800 Squashed commit of the following: commit 359617cddf499633d7db53901d91cd2f9713d7ae Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b12a5ce507d46a296bc45db88d1a3db417 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7. commit bb5f0edce7e3dd6e87800268c87d4823d19f7dcc Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3. commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3dc97c4c7e325924998a1fc1b8cb65604d Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca08739c88a5913da00431c95e9ae13746144d7 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b03613edb71b8351a19194eeaf3ea48c108e51 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3dab8bc4a912f9c7bf7293bc651a09b37d1c Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c29731097b158bc0d62149da08a4b10a540a8cba Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c01175a73892a5c7be0d6cf47786d8aea90 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd4789f053dcd8be21954e654e729343a9bfa5 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed28594f461823fc81c0a7b4b9114bd59ae6 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75c5f3f81fe2714ae3c0495e50cf4397ff0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da8d54333c670c608e140a19eda32e6f44f Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28ef9147587a9570b5f6cfa4a2efdcf09659 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706e5781af6ad565aa8e4ed0af485253adf1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1cb02788c1c90e18feeb97e1bd9c4edebc Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb167efabf777ae70b40864b6b54539ebb63 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a9c818d91d448a53773a6fc2c87cc3b5b4 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c731773c95ee7f17c26af8f13592ddd1eb9b4be Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d77216358fd9ceed59ca472df8376b23cb78b713 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f906853969faf007122412e9e267ce637313 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296541d970bdce27005dd27677f8ca215df7 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f12dd07af3ad2ff33d0deeb71e9f1ce4e10 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b5b4c144a6e79573deb8eb467909b70bfc Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 452616485f655c803e0203f9079c619a2d0cb925 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef2449d825b529e4d01e73ac53d546e243c09 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604fd4d50b6ef208cc3fdc0e4dd88de52494 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aac5db87fba62092becacf0fd11b94d1b6f Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80c487e39b642dd0a377a2506fedd8369d4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf31e138dfc6f3bd60831c06e2fd32671ff9 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e450324084e58881cb8038bc59ab40dd581 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66da8b030f591e7ae0b72b81cbb569e88996 Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d422a698bcdac8d6bf62d568319d4c4bdcc Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89f78314de60db379f6ef63ac9d64a3f2e8 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b49bbb35b0127c83b5e23f80ab67a0f5b5 Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861ba03697b4037138f18caf9a8969cec0277 Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf539723f68b30870e9ec533e4c5f79b689 Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e25cbe368bf1beea25b60550c8c3d7c1ba3 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19a4e1dc51f8bf2c71872fd61a0de610e8b Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932d9cd41746a3b421a1d8624b557bd0d821 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a3819575ef0e60bb18464a969b98170369a05 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668ac6cdf41835d81325410fb40984655ebad Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c355c8ca5d543b7a2d492d15138f91e5d9 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816fb4a06d21d1f3ab92c370bfbbc6b31f0c Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788d6a8bc4e806a143198d13c7e34798689e Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87ee20b46142c118cc1c250105e72bce62f8 Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946b3bd4aac0fd7215ff03c43a091fd5d7be Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd59d34089639cbb2d3dc3c00cf669a8c836 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db45044aaccfdb949ec05fa1a1dff40ba981c20 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8ed6bbef8b528b7ab6f736a1b25887b6781 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe14d92cf607601c5c3a1cb8022b782a2c6 Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a32beaff4804f1985cef0be9bf759ddc21 Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015ffed8ffc7a1d486d23043e7da08b9ea9a Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0cf93b25a4c2a617ec36a521923d2fb752 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4efc2338d664e291cd4a91790695e5ce16f Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479dff7b7b760afe57c010a1b02f8c6571aadf Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3800804111a7bbc4e98aef26cf467435d0 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7f6af711dfaf1392640c3112a998a8a8b3 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b2753c985b3ef4ca7f197349a76e9e21b3f7b Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835996978e9052bbb92567e2c4176b9a9abc Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b82400fd6b00c3ebd908f1ed2ab76017ab430 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472b3c0853c346c7e372dfa766a5b74565f7 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b84b34ab14489c18d0617313f82506b91e Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516d3c7e1bd3e708d301a0bb0201881a7b35 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e394244b46ca4deae46224196bde642636dc47 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a95966b1aa27716d16d36d6e91bc6ea29f Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474b33195a60b8f51d19230402f98a699358 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc0293f368cfd8e6ecf4e4ae47e2f4db383 Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949df18a9fe04782254940ffcbd85a9106b43 Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102a4c0d575357d578ad583ae44a8071aa49 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9cc1cfb9da840ba8246f42ec544a59912b Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2. commit 359617cddf499633d7db53901d91cd2f9713d7ae Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b12a5ce507d46a296bc45db88d1a3db417 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7. commit bb5f0edce7e3dd6e87800268c87d4823d19f7dcc Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3. commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3dc97c4c7e325924998a1fc1b8cb65604d Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca08739c88a5913da00431c95e9ae13746144d7 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b03613edb71b8351a19194eeaf3ea48c108e51 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3dab8bc4a912f9c7bf7293bc651a09b37d1c Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c29731097b158bc0d62149da08a4b10a540a8cba Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c01175a73892a5c7be0d6cf47786d8aea90 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd4789f053dcd8be21954e654e729343a9bfa5 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed28594f461823fc81c0a7b4b9114bd59ae6 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75c5f3f81fe2714ae3c0495e50cf4397ff0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da8d54333c670c608e140a19eda32e6f44f Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28ef9147587a9570b5f6cfa4a2efdcf09659 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706e5781af6ad565aa8e4ed0af485253adf1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1cb02788c1c90e18feeb97e1bd9c4edebc Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb167efabf777ae70b40864b6b54539ebb63 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a9c818d91d448a53773a6fc2c87cc3b5b4 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c731773c95ee7f17c26af8f13592ddd1eb9b4be Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d77216358fd9ceed59ca472df8376b23cb78b713 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f906853969faf007122412e9e267ce637313 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296541d970bdce27005dd27677f8ca215df7 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f12dd07af3ad2ff33d0deeb71e9f1ce4e10 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b5b4c144a6e79573deb8eb467909b70bfc Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 452616485f655c803e0203f9079c619a2d0cb925 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef2449d825b529e4d01e73ac53d546e243c09 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604fd4d50b6ef208cc3fdc0e4dd88de52494 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aac5db87fba62092becacf0fd11b94d1b6f Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80c487e39b642dd0a377a2506fedd8369d4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf31e138dfc6f3bd60831c06e2fd32671ff9 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e450324084e58881cb8038bc59ab40dd581 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66da8b030f591e7ae0b72b81cbb569e88996 Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d422a698bcdac8d6bf62d568319d4c4bdcc Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89f78314de60db379f6ef63ac9d64a3f2e8 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b49bbb35b0127c83b5e23f80ab67a0f5b5 Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861ba03697b4037138f18caf9a8969cec0277 Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf539723f68b30870e9ec533e4c5f79b689 Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e25cbe368bf1beea25b60550c8c3d7c1ba3 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19a4e1dc51f8bf2c71872fd61a0de610e8b Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932d9cd41746a3b421a1d8624b557bd0d821 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a3819575ef0e60bb18464a969b98170369a05 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668ac6cdf41835d81325410fb40984655ebad Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c355c8ca5d543b7a2d492d15138f91e5d9 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816fb4a06d21d1f3ab92c370bfbbc6b31f0c Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788d6a8bc4e806a143198d13c7e34798689e Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87ee20b46142c118cc1c250105e72bce62f8 Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946b3bd4aac0fd7215ff03c43a091fd5d7be Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd59d34089639cbb2d3dc3c00cf669a8c836 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db45044aaccfdb949ec05fa1a1dff40ba981c20 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8ed6bbef8b528b7ab6f736a1b25887b6781 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe14d92cf607601c5c3a1cb8022b782a2c6 Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a32beaff4804f1985cef0be9bf759ddc21 Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015ffed8ffc7a1d486d23043e7da08b9ea9a Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0cf93b25a4c2a617ec36a521923d2fb752 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4efc2338d664e291cd4a91790695e5ce16f Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479dff7b7b760afe57c010a1b02f8c6571aadf Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3800804111a7bbc4e98aef26cf467435d0 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7f6af711dfaf1392640c3112a998a8a8b3 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b2753c985b3ef4ca7f197349a76e9e21b3f7b Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835996978e9052bbb92567e2c4176b9a9abc Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b82400fd6b00c3ebd908f1ed2ab76017ab430 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472b3c0853c346c7e372dfa766a5b74565f7 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b84b34ab14489c18d0617313f82506b91e Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516d3c7e1bd3e708d301a0bb0201881a7b35 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e394244b46ca4deae46224196bde642636dc47 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a95966b1aa27716d16d36d6e91bc6ea29f Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474b33195a60b8f51d19230402f98a699358 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc0293f368cfd8e6ecf4e4ae47e2f4db383 Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949df18a9fe04782254940ffcbd85a9106b43 Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102a4c0d575357d578ad583ae44a8071aa49 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9cc1cfb9da840ba8246f42ec544a59912b Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2. commit fa67d08d86ed4256d6b03c4d6aea78064c29c03c Merge: fe5c33b a988258 Author: Mike <[email protected]> Date: Thu May 13 14:28:48 2021 -0700 Merge remote-tracking branch 'github/master' commit fe5c33bd944bc7ee82409ce949a5859807216a95 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu May 13 21:28:22 2021 +0000 Match git tag B10.3.00_sdos_testing_2 git-svn-id: https://svn/oco/alg/level_2/tags/B10.3.00_sdos_testing_2@36998 816d28dc-4d21-0410-b126-a42eb7b27919 commit b07bb9325d0356b9deb6bd5c5002709fdb4cc8b0 Merge: ea4ab3a 33f25d0 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu May 13 21:26:40 2021 +0000 Update to B10.3.00_sdos_testing_2 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@36997 816d28dc-4d21-0410-b126-a42eb7b27919 commit 33f25d02234e94767fcac0df658a845f0bf7abe5 Author: Mike <[email protected]> Date: Thu May 13 14:25:15 2021 -0700 Update to B10.3.00_sdos_testing_2 git tag. commit a9882587f1c1e7cb1b9d6d3ae0b56542d1589527 Author: Mike <[email protected]> Date: Thu May 13 12:25:30 2021 -0700 Ticket #2954 - Add handling for using SIF 771 if SIF 757 fails. commit 9da6a2c3389faf34fd72199bdd7c5ea08547f397 Author: Mike <[email protected]> Date: Thu May 13 12:20:15 2021 -0700 Update expected results from run test commit 521eba6c405d10f4189e6e6e7ef1aeb863f881da Author: Mike <[email protected]> Date: Thu May 13 11:17:43 2021 -0700 Missed setting water to 4 EOFs for OCO3, fixed that now. commit c8426f8eda56531849af35a6b392f4e30387128b Author: Mike Smyth <[email protected]> Date: Thu May 13 10:27:45 2021 -0700 Ticket #2953 - Add use of 4 EOFs for OCO-3. Note we also closed out Ticket #2952 - update EOF file for OCO3. commit 3c0fe733fc927c57dcfe74690e5a54a2b4c1129c Author: Mike Smyth <[email protected]> Date: Thu May 13 09:36:48 2021 -0700 Update OCO 3 eof file. This is a copy of /home/odell/OCO3_results/ioc/eofs/B10222/eofs/ioc_B10222_QTS_oceanG_sorted_L2.h5 commit 911bd9bdb810ce5a39adbc51cb47b2ebf6f3d3a0 Author: Mike Smyth <[email protected]> Date: Thu May 6 15:27:16 2021 -0700 Ticket #2955 Change A band absco scaling to 1.0005. Note we are currently only doing this for OCO-3, we might also change OCO-2 in the future but that isn't what we currently have here. commit 451e206293079821370b0f568aed820630391376 Author: Mike Smyth <[email protected]> Date: Thu May 6 15:19:26 2021 -0700 Ticket #2951 - Change time.clock to time.process_time in splice_product_files.py program commit cee1445de29ec424354b455fb9241c45e4d8a135 Author: Mike Smyth <[email protected]> Date: Thu May 6 14:44:55 2021 -0700 Ticket #2950 Update Albedo Slope Uncertainty commit 45643450eda62f8b8a70621af97c7be4d8a792c8 Merge: 7bd7464 9335907 Author: Mike <[email protected]> Date: Thu Mar 11 12:05:10 2021 -0800 Merge remote-tracking branch 'github/master' commit 7bd7464f584e61c31d7a9474529db8f4ddd876a5 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 11 20:03:05 2021 +0000 Match git tag B10.3.00_sdos_testing_1 git-svn-id: https://svn/oco/alg/level_2/tags/B10.3.00_sdos_testing_1@36729 816d28dc-4d21-0410-b126-a42eb7b27919 commit ea4ab3a3067f5d9b8347ad3bdc105cddd5305884 Merge: 204a210 67a63ba Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 11 20:01:12 2021 +0000 Update to B10.3.00_sdos_testing_1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@36728 816d28dc-4d21-0410-b126-a42eb7b27919 commit 67a63ba111ac975569155c3ecb2e738e5960c731 Author: Mike <[email protected]> Date: Thu Mar 11 11:59:29 2021 -0800 Squashed commit of the following: commit 933590742d80def8eaa17b57ee361e19aea61407 Author: Mike Smyth <[email protected]> Date: Thu Feb 25 15:00:54 2021 -0800 Ticket #2902 - Change OCO-3 to use new land/water EOF file Chris produced, so rather than having separate land and water EOF files we have one with a Land and Water group. The EOF file is just a place holder example Chris created, we will need to update this. commit 14f9b52a349c707d99de03c7a239cc8fd8a1f3dc Author: Mike Smyth <[email protected]> Date: Thu Feb 25 14:23:52 2021 -0800 Replace l2_oco3_eof.h5 with test data Chris created. This isn't a final version, but rather is a initial test set. Data came from /home/odell/OCO3_results/ioc/eofs/B10208/eofs/ioc_B10208_QTS_LandWater_sorted_L2.h5 originally. commit 6dcf4f23833d2bf36001308b8d3e201de5192beb Author: Mike Smyth <[email protected]> Date: Thu Feb 25 12:44:31 2021 -0800 Run autotools commit 6d5ff90f4edd5871af81a820800df9b33c420fc3 Author: James McDuffie <[email protected]> Date: Thu Feb 25 12:11:26 2021 -0800 Fix unit test failures due to unit tests Lua config depending on old fixed level pressure level objects. commit 093b3dfea1b10be921c74571dde2288d8ec17857 Author: James McDuffie <[email protected]> Date: Wed Feb 24 19:52:11 2021 -0800 Update /Temperature/Levels/covariance in OCO and OCO3 static input files from source file: IGRA_Covariance_Matrix_Temperature_v1_20210224.h5 derived by Robert Nelson. commit a683e9b559777ffc9299ee0b2cbe732c2f904db3 Author: James McDuffie <[email protected]> Date: Wed Feb 24 17:02:45 2021 -0800 Implement temperature profile retrievals with the TemperatureLevel class. commit 3a50bc94e88a6235f3df8a6afa5dba68784a7374 Author: James McDuffie <[email protected]> Date: Tue Feb 16 10:17:40 2021 -0800 Remove explicit aerosol handling from rail road valley config. commit c909e6e827178ba921f83d5eb91d23d2d1ee098c Author: James McDuffie <[email protected]> Date: Wed Jan 13 14:51:59 2021 -0800 Update expected "run_tests" output due to changes in static input files, specifically a change to /Ground/Coxmunk_Albedo/covariance commit 01fc92299b67e470011de7017315047dc5b151ae Author: Greg McGarragh <[email protected]> Date: Thu Dec 24 06:25:21 2020 -0700 Add support for a quadratic albedo over ocean for OCO-2/3 commit 9ef0e54600a09d82d8e4cd4f8e51877c58e62e67 Author: James McDuffie <[email protected]> Date: Tue Dec 1 15:28:48 2020 -0800 Bump version to 10.3.00 for release. commit 7455c64f9f9cb5f8ae16da17ead5a01e823fb8fd Author: James McDuffie <[email protected]> Date: Tue Dec 1 11:52:33 2020 -0800 Ticket #2873 - Use different EOFs for Land versus Ocean for OCO-3 commit 50639f98b45eb12a70fa0fa66794de6a99c8fce5 Author: James McDuffie <[email protected]> Date: Mon Nov 23 10:16:48 2020 -0800 Remove turning off EOF in RRV config to enable processing with both it on or off controlled during the run set up process. commit 823dd2d0d74006e5f71855fd896c58080e022600 Author: James McDuffie <[email protected]> Date: Mon Aug 24 09:02:30 2020 -0700 Update automake related files for change to add config_oco3_rrv.lua commit a1e076ce1124113069b71604422c7da33660af2c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:46:27 2020 -0700 Add splice tool mapping regenerated from latest L2Agg APF files and supports new fields. commit ab34f375e1e57f890553b5839b2714c457ae9d4c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:45:55 2020 -0700 Add bits to the make system so that config_oco3_rrv.lua gets installed. commit f854a3c7715f0fc9b67bb10ae4943018498cc93a Author: James McDuffie <[email protected]> Date: Fri Aug 7 10:24:09 2020 -0700 Add RRV config that uses OCO3 base config. commit 2ab033b32044fd3f83b457e622022d1dfc7628c5 Author: Mike Smyth <[email protected]> Date: Wed Jul 29 20:33:04 2020 -0700 Fix mangled Jacobians we were calculated in the ILS with scaling. IlsFunction is optimized to only calculate d[wn_center,scale] rather than dState, with IlsConvolution applying the chain rule to give the full Jacobian. commit c68e999b2dc87e46f101e9be12c81ab9e296531d Merge: 54631a0 a35d860 Author: Mike Smyth <[email protected]> Date: Fri Jul 24 07:59:32 2020 -0700 Merge branch 'ticket/2805_fit_stretch_ils' commit a35d860f5d9223f2e3378a152d07733ed7927dc3 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 20:45:45 2020 -0700 Fix a number of swig errors we caught with buildbot tests. commit 4da9974c5538bd163dc70ecd77ce7430467a80b9 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 12:01:47 2020 -0700 Ticket #2805 - Fit stretch parameters to the ILS. Clean up the ILSscaling code. Have clean unit tests and run_tests. commit 7f1c81c1308a97cb39cab8f9001d42c77acd4fd7 Author: Mike Smyth <[email protected]> Date: Wed Jul 22 16:46:12 2020 -0700 Continue working on integrating code. This is currently broken, but checkpoint what we have. commit db4d656afd4f42b7be4ce785e46d6072f87d67d7 Author: Mike Smyth <[email protected]> Date: Mon Jun 29 13:44:23 2020 -0700 Catch the changeset from geocarb. This hasn't been tested yet, and it may have stuff that we want to change. But checkin this base. Add option to retrieve an ILS stretch factor per band. Option is: config.fm.instrument.ils_func.retrieve_bands = {true, true, true, true} where in this case there are 4 bands. commit 54631a0b89d56bde0b5d31c9a8a59e1fe0cd761c Author: Mike <[email protected]> Date: Fri Apr 24 09:24:43 2020 -0700 Fix a bug Fabiano found, using obsolete option in numpy.zeros commit 933590742d80def8eaa17b57ee361e19aea61407 Author: Mike Smyth <[email protected]> Date: Thu Feb 25 15:00:54 2021 -0800 Ticket #2902 - Change OCO-3 to use new land/water EOF file Chris produced, so rather than having separate land and water EOF files we have one with a Land and Water group. The EOF file is just a place holder example Chris created, we will need to update this. commit 14f9b52a349c707d99de03c7a239cc8fd8a1f3dc Author: Mike Smyth <[email protected]> Date: Thu Feb 25 14:23:52 2021 -0800 Replace l2_oco3_eof.h5 with test data Chris created. This isn't a final version, but rather is a initial test set. Data came from /home/odell/OCO3_results/ioc/eofs/B10208/eofs/ioc_B10208_QTS_LandWater_sorted_L2.h5 originally. commit 6dcf4f23833d2bf36001308b8d3e201de5192beb Author: Mike Smyth <[email protected]> Date: Thu Feb 25 12:44:31 2021 -0800 Run autotools commit 6d5ff90f4edd5871af81a820800df9b33c420fc3 Author: James McDuffie <[email protected]> Date: Thu Feb 25 12:11:26 2021 -0800 Fix unit test failures due to unit tests Lua config depending on old fixed level pressure level objects. commit 093b3dfea1b10be921c74571dde2288d8ec17857 Author: James McDuffie <[email protected]> Date: Wed Feb 24 19:52:11 2021 -0800 Update /Temperature/Levels/covariance in OCO and OCO3 static input files from source file: IGRA_Covariance_Matrix_Temperature_v1_20210224.h5 derived by Robert Nelson. commit a683e9b559777ffc9299ee0b2cbe732c2f904db3 Author: James McDuffie <[email protected]> Date: Wed Feb 24 17:02:45 2021 -0800 Implement temperature profile retrievals with the TemperatureLevel class. commit 3a50bc94e88a6235f3df8a6afa5dba68784a7374 Author: James McDuffie <[email protected]> Date: Tue Feb 16 10:17:40 2021 -0800 Remove explicit aerosol handling from rail road valley config. commit c909e6e827178ba921f83d5eb91d23d2d1ee098c Author: James McDuffie <[email protected]> Date: Wed Jan 13 14:51:59 2021 -0800 Update expected "run_tests" output due to changes in static input files, specifically a change to /Ground/Coxmunk_Albedo/covariance commit 01fc92299b67e470011de7017315047dc5b151ae Author: Greg McGarragh <[email protected]> Date: Thu Dec 24 06:25:21 2020 -0700 Add support for a quadratic albedo over ocean for OCO-2/3 commit 9ef0e54600a09d82d8e4cd4f8e51877c58e62e67 Author: James McDuffie <[email protected]> Date: Tue Dec 1 15:28:48 2020 -0800 Bump version to 10.3.00 for release. commit 7455c64f9f9cb5f8ae16da17ead5a01e823fb8fd Author: James McDuffie <[email protected]> Date: Tue Dec 1 11:52:33 2020 -0800 Ticket #2873 - Use different EOFs for Land versus Ocean for OCO-3 commit 50639f98b45eb12a70fa0fa66794de6a99c8fce5 Author: James McDuffie <[email protected]> Date: Mon Nov 23 10:16:48 2020 -0800 Remove turning off EOF in RRV config to enable processing with both it on or off controlled during the run set up process. commit 823dd2d0d74006e5f71855fd896c58080e022600 Author: James McDuffie <[email protected]> Date: Mon Aug 24 09:02:30 2020 -0700 Update automake related files for change to add config_oco3_rrv.lua commit a1e076ce1124113069b71604422c7da33660af2c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:46:27 2020 -0700 Add splice tool mapping regenerated from latest L2Agg APF files and supports new fields. commit ab34f375e1e57f890553b5839b2714c457ae9d4c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:45:55 2020 -0700 Add bits to the make system so that config_oco3_rrv.lua gets installed. commit f854a3c7715f0fc9b67bb10ae4943018498cc93a Author: James McDuffie <[email protected]> Date: Fri Aug 7 10:24:09 2020 -0700 Add RRV config that uses OCO3 base config. commit 2ab033b32044fd3f83b457e622022d1dfc7628c5 Author: Mike Smyth <[email protected]> Date: Wed Jul 29 20:33:04 2020 -0700 Fix mangled Jacobians we were calculated in the ILS with scaling. IlsFunction is optimized to only calculate d[wn_center,scale] rather than dState, with IlsConvolution applying the chain rule to give the full Jacobian. commit c68e999b2dc87e46f101e9be12c81ab9e296531d Merge: 54631a0 a35d860 Author: Mike Smyth <[email protected]> Date: Fri Jul 24 07:59:32 2020 -0700 Merge branch 'ticket/2805_fit_stretch_ils' commit a35d860f5d9223f2e3378a152d07733ed7927dc3 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 20:45:45 2020 -0700 Fix a number of swig errors we caught with buildbot tests. commit 4da9974c5538bd163dc70ecd77ce7430467a80b9 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 12:01:47 2020 -0700 Ticket #2805 - Fit stretch parameters to the ILS. Clean up the ILSscaling code. Have clean unit tests and run_tests. commit 7f1c81c1308a97cb39cab8f9001d42c77acd4fd7 Author: Mike Smyth <[email protected]> Date: Wed Jul 22 16:46:12 2020 -0700 Continue working on integrating code. This is currently broken, but checkpoint what we have. commit db4d656afd4f42b7be4ce785e46d6072f87d67d7 Author: Mike Smyth <[email protected]> Date: Mon Jun 29 13:44:23 2020 -0700 Catch the changeset from geocarb. This hasn't been tested yet, and it may have stuff that we want to change. But checkin this base. Add option to retrieve an ILS stretch factor per band. Option is: config.fm.instrument.ils_func.retrieve_bands = {true, true, true, true} where in this case there are 4 bands. commit 54631a0b89d56bde0b5d31c9a8a59e1fe0cd761c Author: Mike <[email protected]> Date: Fri Apr 24 09:24:43 2020 -0700 Fix a bug Fabiano found, using obsolete option in numpy.zeros commit 2751c96f427724dbcc89826dc7b63ad82e2eab89 Merge: 05ef867 a7692b3 Author: Mike <[email protected]> Date: Mon Mar 23 13:47:05 2020 -0700 Merge remote-tracking branch 'github/master' commit 05ef867e7f977310a9e520fc847e0247ed9bcf20 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Mon Mar 23 20:46:35 2020 +0000 Match git tag B10.2.00_sdos_testing_1 git-svn-id: https://svn/oco/alg/level_2/tags/B10.2.00_sdos_testing_1@35395 816d28dc-4d21-0410-b126-a42eb7b27919 commit 204a210158dc7e55c7dc7a74f4b6222a736a4680 Merge: 5560961 c144436 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Mon Mar 23 20:45:16 2020 +0000 Update to B10.2.00_sdos_testing_1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@35394 816d28dc-4d21-0410-b126-a42eb7b27919 commit c144436657ef6a424a97714e1dad527f1c5113e5 Author: Mike <[email protected]> Date: Mon Mar 23 13:44:09 2020 -0700 Squashed commit of the following: commit a7692b3b207eb0bc9deea8af05b5ff13a68a0aff Author: Mike <[email protected]> Date: Fri Mar 20 16:34:31 2020 -0700 Change the default wall clock time for pleiades jobs. We were failling with our integration test taking too long. commit bf341ea99d112c48047e8f8dd5daf072af11bebe Author: Mike <[email protected]> Date: Thu Mar 19 20:54:56 2020 -0700 With cut an paste from an email, ended up with non-ascii characters. Fix that commit 122020ee5e11d7502e071f4046f76ef6e98ab489 Author: Mike <[email protected]> Date: Thu Mar 19 17:22:20 2020 -0700 Ticket #2757 - Use SDOS python virtual environment as the default. commit 24cb8129fb8619f1de8115518a0257eef23dfff5 Author: Mike <Mike.M.…
commit 6679378a2956151bc9d0d9838ca17f27918644af Merge: b2737ac af6ef65 Author: Mike <[email protected]> Date: Thu Mar 7 15:11:30 2024 -0800 Merge remote-tracking branch 'github/master' commit b2737acb45048491ef656895431ab80bc298d7ec Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 7 23:11:02 2024 +0000 Match git tag B11.0.65_rc1 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.65_rc1@40555 816d28dc-4d21-0410-b126-a42eb7b27919 commit bb39fb1890c5f30bdd6447eb2b970409151f4ebe Merge: 56fc47a 6659648 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 7 23:10:01 2024 +0000 Update to B11.0.65_rc1 git tag version. git-svn-id: https://svn/oco/alg/level_2/trunk@40554 816d28dc-4d21-0410-b126-a42eb7b27919 commit 66596483f0ae8f3c27c83d6c6af69c1dde50c977 Author: Mike <[email protected]> Date: Thu Mar 7 15:06:39 2024 -0800 Squashed commit of the following: commit af6ef6599c59553f245dc962b60ffd3440245361 Author: Mike <[email protected]> Date: Thu Mar 7 10:57:59 2024 -0800 Add making sure pip is installed. Sometimes on Pleiades the python build leaves out pip, not really clear why. commit 22b3ee4562dc85c219e0fb8e43bcea009998b222 Author: Mike <[email protected]> Date: Wed Mar 6 12:54:55 2024 -0800 Update expected results commit b7d90fdd16e4c7412069b7a1794e413637f9098f Author: Mike <[email protected]> Date: Wed Mar 6 12:01:55 2024 -0800 Ticket #3256 - Update absco scaling for OCO3 commit ceb104e782c41e35aa17fa05d4dcdac326f910b8 Author: Mike <[email protected]> Date: Wed Mar 6 11:59:12 2024 -0800 Update version number to prepare for B11.0.65 delivery. commit af6ef6599c59553f245dc962b60ffd3440245361 Author: Mike <[email protected]> Date: Thu Mar 7 10:57:59 2024 -0800 Add making sure pip is installed. Sometimes on Pleiades the python build leaves out pip, not really clear why. commit 22b3ee4562dc85c219e0fb8e43bcea009998b222 Author: Mike <[email protected]> Date: Wed Mar 6 12:54:55 2024 -0800 Update expected results commit b7d90fdd16e4c7412069b7a1794e413637f9098f Author: Mike <[email protected]> Date: Wed Mar 6 12:01:55 2024 -0800 Ticket #3256 - Update absco scaling for OCO3 commit ceb104e782c41e35aa17fa05d4dcdac326f910b8 Author: Mike <[email protected]> Date: Wed Mar 6 11:59:12 2024 -0800 Update version number to prepare for B11.0.65 delivery. commit d2b11dece881d9d503ad2bb05719bf6d0b316f31 Merge: 3dc41e5 062950a Author: Mike <[email protected]> Date: Wed Dec 13 16:58:06 2023 -0800 Merge remote-tracking branch 'github/master' commit 3dc41e53c35244bbc4c91849b11d9fba214b4fe1 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Dec 14 00:57:07 2023 +0000 Match git tag B11.0.50_rc1 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.50_rc1@40216 816d28dc-4d21-0410-b126-a42eb7b27919 commit 56fc47a3d973c4b32a348c64e0ee3fabd272744a Merge: e35423e 97545fa Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Dec 14 00:54:08 2023 +0000 Update to B11.0.50_rc1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@40215 816d28dc-4d21-0410-b126-a42eb7b27919 commit 97545faad487932fbecd2c41b4cef717e64015f5 Author: Mike <[email protected]> Date: Wed Dec 13 16:52:51 2023 -0800 Squashed commit of the following: commit 062950ae4dce2688d63dea2b4839744fcb7462d8 Author: Mike <[email protected]> Date: Wed Dec 13 11:42:20 2023 -0800 Ticket #3219 - Update absco scaling values for OCO-3, which are different than OCO-2. commit afc9dd87608314501d52056184100ddf0c02ea19 Author: Mike <[email protected]> Date: Wed Dec 13 10:15:13 2023 -0800 Update version number to prepare for B11.0.50 delivery. commit 062950ae4dce2688d63dea2b4839744fcb7462d8 Author: Mike <[email protected]> Date: Wed Dec 13 11:42:20 2023 -0800 Ticket #3219 - Update absco scaling values for OCO-3, which are different than OCO-2. commit afc9dd87608314501d52056184100ddf0c02ea19 Author: Mike <[email protected]> Date: Wed Dec 13 10:15:13 2023 -0800 Update version number to prepare for B11.0.50 delivery. commit 6b31483188962009043fbeafbcfbeb2dae2dafbb Merge: c6f4ece 4f8d8c1 Author: Mike <[email protected]> Date: Fri Sep 15 14:56:28 2023 -0700 Merge remote-tracking branch 'github/master' commit c6f4ece527c26d10cede1aa1210451b8f5d72707 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri Sep 15 21:56:10 2023 +0000 Match git tag B11.0.31_rc3 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.31_rc3@39805 816d28dc-4d21-0410-b126-a42eb7b27919 commit e35423eac94b179371950a50a50340b4cdb00dee Merge: 7e67375 a9f0958 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri Sep 15 21:54:51 2023 +0000 Update to B11.0.31_rc3 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@39804 816d28dc-4d21-0410-b126-a42eb7b27919 commit a9f0958763c83e36fb75a26fdf03b1f87a7fb750 Author: Mike <[email protected]> Date: Fri Sep 15 14:53:15 2023 -0700 Squashed commit of the following: commit 4f8d8c1fcd00766850dc36ecf82f9efaaedd16bc Author: Mike <[email protected]> Date: Fri Sep 15 11:54:38 2023 -0700 Update expected results commit 03ca8ad6eee95603a4e5ce3f12951893054df18e Author: Mike <[email protected]> Date: Fri Sep 1 11:53:14 2023 -0700 Change OCO3 configuration to use 3 EOFs only for band 1 and 2 (previously we had 4 for all bands). commit 1072d30757782b98a5f00bd1c313661e91504f7a Author: Mike <[email protected]> Date: Fri Sep 1 11:17:17 2023 -0700 Use /home/odell/OCO3_results/b11/qts/eof/B11027_QTS-geosit/eofs/oco3_B11_QTS-geosit_oceanG_alt1_falt1_sorted_L2.h5 from Chris as update for OCO3 EOFs commit 7e9c3ea08e026fce1a510a2568c8b918a4daee75 Author: Mike <[email protected]> Date: Tue Jul 18 16:08:06 2023 -0700 Missed updating the pleiades module in setup_fp_env.sh.in commit ad23b891f72f278f1f926261c062236887b87f3e Author: Mike <[email protected]> Date: Tue Jul 18 14:58:27 2023 -0700 Fix typo in last checkin commit d04ec979ba32aac93177db11e68596fe23f72b63 Author: Mike <[email protected]> Date: Tue Jul 18 14:50:32 2023 -0700 Updates as we work through Pleiades build issues. commit e2848992f9835b76fede719397e286af42c2e310 Author: Mike <[email protected]> Date: Tue Jul 18 12:20:00 2023 -0700 Updates as we work through Pleiades build issues. commit 4f8d8c1fcd00766850dc36ecf82f9efaaedd16bc Author: Mike <[email protected]> Date: Fri Sep 15 11:54:38 2023 -0700 Update expected results commit 03ca8ad6eee95603a4e5ce3f12951893054df18e Author: Mike <[email protected]> Date: Fri Sep 1 11:53:14 2023 -0700 Change OCO3 configuration to use 3 EOFs only for band 1 and 2 (previously we had 4 for all bands). commit 1072d30757782b98a5f00bd1c313661e91504f7a Author: Mike <[email protected]> Date: Fri Sep 1 11:17:17 2023 -0700 Use /home/odell/OCO3_results/b11/qts/eof/B11027_QTS-geosit/eofs/oco3_B11_QTS-geosit_oceanG_alt1_falt1_sorted_L2.h5 from Chris as update for OCO3 EOFs commit 7e9c3ea08e026fce1a510a2568c8b918a4daee75 Author: Mike <[email protected]> Date: Tue Jul 18 16:08:06 2023 -0700 Missed updating the pleiades module in setup_fp_env.sh.in commit ad23b891f72f278f1f926261c062236887b87f3e Author: Mike <[email protected]> Date: Tue Jul 18 14:58:27 2023 -0700 Fix typo in last checkin commit d04ec979ba32aac93177db11e68596fe23f72b63 Author: Mike <[email protected]> Date: Tue Jul 18 14:50:32 2023 -0700 Updates as we work through Pleiades build issues. commit e2848992f9835b76fede719397e286af42c2e310 Author: Mike <[email protected]> Date: Tue Jul 18 12:20:00 2023 -0700 Updates as we work through Pleiades build issues. commit c6a495524de1346a426786d5cc40dd32a7d268bb Merge: c1dc51e cf03986 Author: Mike <[email protected]> Date: Fri May 12 15:28:51 2023 -0700 Merge remote-tracking branch 'github/master' commit c1dc51e02c4397b3d7cf840f32c90d2b862413dd Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri May 12 22:28:33 2023 +0000 Match git tag B11.0.33_rc1 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.33_rc1@39518 816d28dc-4d21-0410-b126-a42eb7b27919 commit 7e67375210bf1f1c0dd7e5a05f8a8453205b797b Merge: 2add840 279e0d1 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Fri May 12 22:26:52 2023 +0000 Update to B11.0.33_rc1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@39517 816d28dc-4d21-0410-b126-a42eb7b27919 commit 279e0d1e2cddf4c811b6877a1e5038bc418f0464 Author: Mike <[email protected]> Date: Fri May 12 15:25:12 2023 -0700 Squashed commit of the following: commit cf0398676c0b6c632528a6e16ee4f897741c353f Author: Mike <[email protected]> Date: Fri May 12 12:49:13 2023 -0700 Update version number to 11.0.31. commit 00dd0ccdbb9dcc97b258b929c71ce7f9d9d82e25 Author: Mike <[email protected]> Date: Sun Apr 30 15:52:42 2023 -0700 Fix the GSL solvers for the newer version of GSL. I don't think these actually get used for anything right now, but no reason not to fix everything so the code is available if needed. commit 9ebf212cc2cd6bd43e955a6f8076d0c1536712da Author: Mike <[email protected]> Date: Sun Apr 30 15:51:35 2023 -0700 The new version of blitz doesn't have IO for 5d arrays. We could put this in or work around somehow, but we only have one test that needs this. Just commend out the test. If we ever have an issue with this, we can come back and actually fix this. But it doesn't currently seem like it is worth the effort. commit f8a02ac98ed3d23b8e1cf3216842c2ad92201367 Author: Mike <[email protected]> Date: Sun Apr 30 12:16:35 2023 -0700 Update a number of input/expected results for the newer format of blitz arrays. commit 3495e70cdad2576763259f2434c4add963c36117 Author: Mike <[email protected]> Date: Fri Apr 28 16:42:03 2023 -0700 Fix a number of unit test input/output to use the newer form of blitz array io. No actual changes, just format update. commit efbcb0acb21039408bc4b48e906789a6e8154930 Author: Mike <[email protected]> Date: Fri Apr 28 16:41:19 2023 -0700 Fix a real bug, pressure_level isn't in general the same object returned each time so the logic in interpolate_to_grid is wrong. This has been the the code for a long time, I'm not sure why we never ran into it. commit 889a89f809365aa1a84692e9d44f44f7f112fe83 Author: Mike <[email protected]> Date: Fri Apr 28 14:44:49 2023 -0700 Fix a number of warnings we got with the newer, stricter compilers on redhat 8. None of these looked serious, but fix so the warnings don't hide possibly important warnings. commit 7dca909d9fbe58427d29903a45222fd99e881433 Author: Mike <[email protected]> Date: Tue Apr 18 09:17:19 2023 -0700 Fix a number of unit tests, still have a few failing. commit 20c0f8246627a4d28aafbafc38eae5e4d83a7e1c Author: Mike <[email protected]> Date: Mon Apr 17 15:49:02 2023 -0700 Replace usage of auto_ptr in luabind with unique_ptr commit d58f1f253260f9fa945f7f2c61d2f7cd7a8975cb Author: Mike <[email protected]> Date: Mon Apr 17 15:16:39 2023 -0700 Update the various thirdparty libraries. We don't necessarily need the new versions, but stuff was really out of date. We want to catch anything that might have been fixed for oracle linux 8. commit c7aae59bdc069170b7e0ae4e4114a3a5ed0d2941 Author: Mike <[email protected]> Date: Mon Apr 17 15:06:32 2023 -0700 Update to more recent version of boost commit bbf36c03836b8c26bd6700d9602c27d05f044128 Author: Mike <[email protected]> Date: Mon Apr 17 14:18:22 2023 -0700 Update expected test results. commit 788f82984a6656361c054d2ec150d73198395779 Author: Mike <[email protected]> Date: Mon Apr 17 12:46:41 2023 -0700 Fix unit test, needed to select right version of overloaded cos to use in integration test. commit 4409733a4df6801b149fb9dafaa89d8615162665 Author: Mike <[email protected]> Date: Mon Apr 17 12:22:18 2023 -0700 Update commonlib version for the one build on oracle 8. commit cf0398676c0b6c632528a6e16ee4f897741c353f Author: Mike <[email protected]> Date: Fri May 12 12:49:13 2023 -0700 Update version number to 11.0.31. commit 00dd0ccdbb9dcc97b258b929c71ce7f9d9d82e25 Author: Mike <[email protected]> Date: Sun Apr 30 15:52:42 2023 -0700 Fix the GSL solvers for the newer version of GSL. I don't think these actually get used for anything right now, but no reason not to fix everything so the code is available if needed. commit 9ebf212cc2cd6bd43e955a6f8076d0c1536712da Author: Mike <[email protected]> Date: Sun Apr 30 15:51:35 2023 -0700 The new version of blitz doesn't have IO for 5d arrays. We could put this in or work around somehow, but we only have one test that needs this. Just commend out the test. If we ever have an issue with this, we can come back and actually fix this. But it doesn't currently seem like it is worth the effort. commit f8a02ac98ed3d23b8e1cf3216842c2ad92201367 Author: Mike <[email protected]> Date: Sun Apr 30 12:16:35 2023 -0700 Update a number of input/expected results for the newer format of blitz arrays. commit 3495e70cdad2576763259f2434c4add963c36117 Author: Mike <[email protected]> Date: Fri Apr 28 16:42:03 2023 -0700 Fix a number of unit test input/output to use the newer form of blitz array io. No actual changes, just format update. commit efbcb0acb21039408bc4b48e906789a6e8154930 Author: Mike <[email protected]> Date: Fri Apr 28 16:41:19 2023 -0700 Fix a real bug, pressure_level isn't in general the same object returned each time so the logic in interpolate_to_grid is wrong. This has been the the code for a long time, I'm not sure why we never ran into it. commit 889a89f809365aa1a84692e9d44f44f7f112fe83 Author: Mike <[email protected]> Date: Fri Apr 28 14:44:49 2023 -0700 Fix a number of warnings we got with the newer, stricter compilers on redhat 8. None of these looked serious, but fix so the warnings don't hide possibly important warnings. commit 7dca909d9fbe58427d29903a45222fd99e881433 Author: Mike <[email protected]> Date: Tue Apr 18 09:17:19 2023 -0700 Fix a number of unit tests, still have a few failing. commit 20c0f8246627a4d28aafbafc38eae5e4d83a7e1c Author: Mike <[email protected]> Date: Mon Apr 17 15:49:02 2023 -0700 Replace usage of auto_ptr in luabind with unique_ptr commit d58f1f253260f9fa945f7f2c61d2f7cd7a8975cb Author: Mike <[email protected]> Date: Mon Apr 17 15:16:39 2023 -0700 Update the various thirdparty libraries. We don't necessarily need the new versions, but stuff was really out of date. We want to catch anything that might have been fixed for oracle linux 8. commit c7aae59bdc069170b7e0ae4e4114a3a5ed0d2941 Author: Mike <[email protected]> Date: Mon Apr 17 15:06:32 2023 -0700 Update to more recent version of boost commit bbf36c03836b8c26bd6700d9602c27d05f044128 Author: Mike <[email protected]> Date: Mon Apr 17 14:18:22 2023 -0700 Update expected test results. commit 788f82984a6656361c054d2ec150d73198395779 Author: Mike <[email protected]> Date: Mon Apr 17 12:46:41 2023 -0700 Fix unit test, needed to select right version of overloaded cos to use in integration test. commit 4409733a4df6801b149fb9dafaa89d8615162665 Author: Mike <[email protected]> Date: Mon Apr 17 12:22:18 2023 -0700 Update commonlib version for the one build on oracle 8. commit 85b39aac8096d3387c1569d2cb9a7ceedcd48e82 Merge: b899d63 359617c Author: Mike <[email protected]> Date: Wed Feb 9 15:06:53 2022 -0800 Merge remote-tracking branch 'github/master' commit b899d63642de01017457f5b162d780a3d8b3d000 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Wed Feb 9 23:06:27 2022 +0000 Match git tag B11.0.05_rc2 git-svn-id: https://svn/oco/alg/level_2/tags/B11.0.05_rc2@38123 816d28dc-4d21-0410-b126-a42eb7b27919 commit 2add8407d40f26a58ccfe778e3ceef96dd0e5e12 Merge: b07bb93 1b0490f Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Wed Feb 9 23:04:40 2022 +0000 Update to B11.0.05_rc2 git tag version. git-svn-id: https://svn/oco/alg/level_2/trunk@38122 816d28dc-4d21-0410-b126-a42eb7b27919 commit 1b0490fdf85981366e19e5ad3b2dc95cbfa49eef Author: Mike <[email protected]> Date: Wed Feb 9 14:36:45 2022 -0800 Squashed commit of the following: commit 359617cddf499633d7db53901d91cd2f9713d7ae Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b12a5ce507d46a296bc45db88d1a3db417 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7. commit bb5f0edce7e3dd6e87800268c87d4823d19f7dcc Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3. commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3dc97c4c7e325924998a1fc1b8cb65604d Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca08739c88a5913da00431c95e9ae13746144d7 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b03613edb71b8351a19194eeaf3ea48c108e51 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3dab8bc4a912f9c7bf7293bc651a09b37d1c Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c29731097b158bc0d62149da08a4b10a540a8cba Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c01175a73892a5c7be0d6cf47786d8aea90 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd4789f053dcd8be21954e654e729343a9bfa5 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed28594f461823fc81c0a7b4b9114bd59ae6 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75c5f3f81fe2714ae3c0495e50cf4397ff0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da8d54333c670c608e140a19eda32e6f44f Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28ef9147587a9570b5f6cfa4a2efdcf09659 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706e5781af6ad565aa8e4ed0af485253adf1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1cb02788c1c90e18feeb97e1bd9c4edebc Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb167efabf777ae70b40864b6b54539ebb63 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a9c818d91d448a53773a6fc2c87cc3b5b4 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c731773c95ee7f17c26af8f13592ddd1eb9b4be Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d77216358fd9ceed59ca472df8376b23cb78b713 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f906853969faf007122412e9e267ce637313 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296541d970bdce27005dd27677f8ca215df7 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f12dd07af3ad2ff33d0deeb71e9f1ce4e10 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b5b4c144a6e79573deb8eb467909b70bfc Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 452616485f655c803e0203f9079c619a2d0cb925 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef2449d825b529e4d01e73ac53d546e243c09 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604fd4d50b6ef208cc3fdc0e4dd88de52494 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aac5db87fba62092becacf0fd11b94d1b6f Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80c487e39b642dd0a377a2506fedd8369d4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf31e138dfc6f3bd60831c06e2fd32671ff9 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e450324084e58881cb8038bc59ab40dd581 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66da8b030f591e7ae0b72b81cbb569e88996 Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d422a698bcdac8d6bf62d568319d4c4bdcc Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89f78314de60db379f6ef63ac9d64a3f2e8 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b49bbb35b0127c83b5e23f80ab67a0f5b5 Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861ba03697b4037138f18caf9a8969cec0277 Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf539723f68b30870e9ec533e4c5f79b689 Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e25cbe368bf1beea25b60550c8c3d7c1ba3 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19a4e1dc51f8bf2c71872fd61a0de610e8b Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932d9cd41746a3b421a1d8624b557bd0d821 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a3819575ef0e60bb18464a969b98170369a05 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668ac6cdf41835d81325410fb40984655ebad Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c355c8ca5d543b7a2d492d15138f91e5d9 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816fb4a06d21d1f3ab92c370bfbbc6b31f0c Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788d6a8bc4e806a143198d13c7e34798689e Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87ee20b46142c118cc1c250105e72bce62f8 Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946b3bd4aac0fd7215ff03c43a091fd5d7be Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd59d34089639cbb2d3dc3c00cf669a8c836 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db45044aaccfdb949ec05fa1a1dff40ba981c20 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8ed6bbef8b528b7ab6f736a1b25887b6781 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe14d92cf607601c5c3a1cb8022b782a2c6 Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a32beaff4804f1985cef0be9bf759ddc21 Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015ffed8ffc7a1d486d23043e7da08b9ea9a Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0cf93b25a4c2a617ec36a521923d2fb752 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4efc2338d664e291cd4a91790695e5ce16f Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479dff7b7b760afe57c010a1b02f8c6571aadf Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3800804111a7bbc4e98aef26cf467435d0 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7f6af711dfaf1392640c3112a998a8a8b3 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b2753c985b3ef4ca7f197349a76e9e21b3f7b Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835996978e9052bbb92567e2c4176b9a9abc Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b82400fd6b00c3ebd908f1ed2ab76017ab430 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472b3c0853c346c7e372dfa766a5b74565f7 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b84b34ab14489c18d0617313f82506b91e Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516d3c7e1bd3e708d301a0bb0201881a7b35 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e394244b46ca4deae46224196bde642636dc47 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a95966b1aa27716d16d36d6e91bc6ea29f Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474b33195a60b8f51d19230402f98a699358 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc0293f368cfd8e6ecf4e4ae47e2f4db383 Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949df18a9fe04782254940ffcbd85a9106b43 Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102a4c0d575357d578ad583ae44a8071aa49 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9cc1cfb9da840ba8246f42ec544a59912b Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2. commit 359617cddf499633d7db53901d91cd2f9713d7ae Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:09:31 2022 -0800 Continue getting configure/python stuff working commit d3fd06b12a5ce507d46a296bc45db88d1a3db417 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:05:10 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7. commit bb5f0edce7e3dd6e87800268c87d4823d19f7dcc Author: Mike Smyth <[email protected]> Date: Mon Feb 7 19:04:51 2022 -0800 Revert "Continue getting configure/python stuff working" This reverts commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3. commit 8fba099e86a9ce19f4a98f9bcfac030205cac1b3 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:58:50 2022 -0800 Continue getting configure/python stuff working commit 652095bd3c35da49c5de01a8c3081f62ab1f5bc7 Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:49:20 2022 -0800 Continue getting configure/python stuff working commit 1312cb3dc97c4c7e325924998a1fc1b8cb65604d Author: Mike Smyth <[email protected]> Date: Mon Feb 7 18:36:14 2022 -0800 Add LD_LIBRARY_PATH needed on pleiades. commit 8ca08739c88a5913da00431c95e9ae13746144d7 Author: Mike <[email protected]> Date: Mon Feb 7 16:24:47 2022 -0800 Update expected results after moving everything to absco 5.2 commit 70b03613edb71b8351a19194eeaf3ea48c108e51 Author: Mike <[email protected]> Date: Mon Feb 7 12:11:18 2022 -0800 Update expected results after moving everything to absco 5.2 commit 1d2c3dab8bc4a912f9c7bf7293bc651a09b37d1c Author: Mike <[email protected]> Date: Mon Feb 7 07:47:35 2022 -0800 Update expected results after moving everything to absco 5.2 commit c29731097b158bc0d62149da08a4b10a540a8cba Author: Mike Smyth <[email protected]> Date: Sun Feb 6 21:14:31 2022 -0800 Change absco version to 5.2_final everywhere, it was also changed in the oco base configuration. commit 1a719c01175a73892a5c7be0d6cf47786d8aea90 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:11:46 2022 -0800 Continue trying to get pleiades build working. commit 77cd4789f053dcd8be21954e654e729343a9bfa5 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 17:09:52 2022 -0800 Continue trying to get pleiades build working. commit 77d6ed28594f461823fc81c0a7b4b9114bd59ae6 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:54:06 2022 -0800 Continue trying to get pleiades build working. commit 9660b75c5f3f81fe2714ae3c0495e50cf4397ff0 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:47:43 2022 -0800 Continue trying to get pleiades build working. commit 62743da8d54333c670c608e140a19eda32e6f44f Author: Mike Smyth <[email protected]> Date: Sun Feb 6 15:18:34 2022 -0800 Continue trying to get pleiades build working. commit 92fc28ef9147587a9570b5f6cfa4a2efdcf09659 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:54:14 2022 -0800 Continue trying to get pleiades build working. commit 67df706e5781af6ad565aa8e4ed0af485253adf1 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:33 2022 -0800 Continue trying to get pleiades build working. commit 8ebccc1cb02788c1c90e18feeb97e1bd9c4edebc Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:12:26 2022 -0800 Continue trying to get pleiades build working. commit 1438eb167efabf777ae70b40864b6b54539ebb63 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:08:59 2022 -0800 Continue trying to get pleiades build working. commit 057977a9c818d91d448a53773a6fc2c87cc3b5b4 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 14:06:19 2022 -0800 Continue trying to get pleiades build working. commit 7c731773c95ee7f17c26af8f13592ddd1eb9b4be Author: Mike Smyth <[email protected]> Date: Sun Feb 6 13:58:27 2022 -0800 Continue trying to get pleiades build working. commit d77216358fd9ceed59ca472df8376b23cb78b713 Author: Mike Smyth <[email protected]> Date: Sun Feb 6 12:41:00 2022 -0800 Changes to build on Pleiades. commit fd73f906853969faf007122412e9e267ce637313 Author: Mike Smyth <[email protected]> Date: Thu Feb 3 12:38:02 2022 -0800 Revert the changes I tried making for pleiades, turned out to be a bad idea. We still need to fix the problems, but we need to back up. commit d50d296541d970bdce27005dd27677f8ca215df7 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:25:29 2022 -0800 Continue tweaking pleiades build. commit 73808f12dd07af3ad2ff33d0deeb71e9f1ce4e10 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 12:23:00 2022 -0800 Continue tweaking pleiades build. commit 421bd3b5b4c144a6e79573deb8eb467909b70bfc Author: Mike Smyth <[email protected]> Date: Tue Jan 11 11:09:38 2022 -0800 Continue tweaking pleiades build. commit 452616485f655c803e0203f9079c619a2d0cb925 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:46:26 2022 -0800 Fix typo in last checkin commit dceef2449d825b529e4d01e73ac53d546e243c09 Author: Mike Smyth <[email protected]> Date: Tue Jan 11 10:19:18 2022 -0800 Updates for building thirdparty python libraries on Pleiades, use pip instead of setup.py which works better with python 3.9. commit f5dd604fd4d50b6ef208cc3fdc0e4dd88de52494 Merge: e6769aa 6c59e80 Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:52 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit e6769aac5db87fba62092becacf0fd11b94d1b6f Author: James McDuffie <[email protected]> Date: Tue Jan 11 08:58:34 2022 -0800 More scaled coxmunk indexing fixes. commit 6c59e80c487e39b642dd0a377a2506fedd8369d4 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:25:50 2022 -0800 Update modules on pleiades for the new TOSS 3 version of the system. commit 1daebf31e138dfc6f3bd60831c06e2fd32671ff9 Merge: dbf43e4 936e66d Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:23:46 2022 -0800 Merge remote-tracking branch 'origin/master' commit dbf43e450324084e58881cb8038bc59ab40dd581 Author: Mike Smyth <[email protected]> Date: Mon Jan 10 17:22:06 2022 -0800 Fix obsolete ruby expression. Only used on pleiades system. commit 936e66da8b030f591e7ae0b72b81cbb569e88996 Author: James McDuffie <[email protected]> Date: Mon Jan 10 17:03:12 2022 -0800 Fix unitialized errors in scaled coxmunk code commit f0b75d422a698bcdac8d6bf62d568319d4c4bdcc Author: Mike <[email protected]> Date: Tue Jan 4 09:48:14 2022 -0800 Update expected results after ABSCO scaling change. commit d99cc89f78314de60db379f6ef63ac9d64a3f2e8 Merge: 3df861b cd5da7b Author: Mike <[email protected]> Date: Tue Jan 4 09:47:41 2022 -0800 Merge remote-tracking branch 'origin/master' commit cd5da7b49bbb35b0127c83b5e23f80ab67a0f5b5 Author: James McDuffie <[email protected]> Date: Mon Jan 3 16:48:40 2022 -0800 Fix uninitialized memory bug in LIDORT 3.8 code commit 3df861ba03697b4037138f18caf9a8969cec0277 Author: Mike <[email protected]> Date: Mon Jan 3 12:43:20 2022 -0800 Ticket #3042 - Update absco scaling for OCO-2 commit 1f41aaf539723f68b30870e9ec533e4c5f79b689 Merge: 1eaf9e2 35aac19 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:26 2022 -0800 Merge branch 'master' of github.jpl.nasa.gov:OCO/RtRetrievalFramework commit 1eaf9e25cbe368bf1beea25b60550c8c3d7c1ba3 Author: Mike <[email protected]> Date: Mon Jan 3 12:03:12 2022 -0800 Small bug fix in generating input files commit 35aac19a4e1dc51f8bf2c71872fd61a0de610e8b Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:52:15 2021 -0800 Update expected output of oco2_sounding_3 end to end test due to changes to using a scaled coxmunk by default and the change to the windspeed covariance. commit a190932d9cd41746a3b421a1d8624b557bd0d821 Author: James McDuffie <[email protected]> Date: Tue Nov 30 10:51:10 2021 -0800 Reduce the OCO2 prior wind speed 1-sigma uncertainty to 3.0 m/s. commit 2a6a3819575ef0e60bb18464a969b98170369a05 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:16:07 2021 -0800 Make scaled Cox-Munk setup to be the default surface parameterization over water. commit 37a668ac6cdf41835d81325410fb40984655ebad Author: Greg McGarragh <[email protected]> Date: Wed Nov 3 01:12:50 2021 -0600 Fix ocean surface reflectance uncertainty. commit ed26d5c355c8ca5d543b7a2d492d15138f91e5d9 Author: James McDuffie <[email protected]> Date: Mon Nov 29 15:04:36 2021 -0800 Apply fix to LIDORT 3.8.3 for cases where delta-m scaling is off and number of streams == 1 commit 2acb816fb4a06d21d1f3ab92c370bfbbc6b31f0c Author: James McDuffie <[email protected]> Date: Tue Oct 26 13:32:50 2021 -0700 Updated test expected values due to changes in l_rad commit f671788d6a8bc4e806a143198d13c7e34798689e Author: James McDuffie <[email protected]> Date: Tue Oct 26 11:05:33 2021 -0700 Fix inadvert change during merging that remove usage of L2CPr files for the CO2 apriori. commit bd0f87ee20b46142c118cc1c250105e72bce62f8 Author: James McDuffie <[email protected]> Date: Tue Oct 26 10:46:24 2021 -0700 Additional l_rad fixes from Vijay 10/25/21 commit 00cf946b3bd4aac0fd7215ff03c43a091fd5d7be Author: James McDuffie <[email protected]> Date: Mon Oct 18 09:45:32 2021 -0700 Update end to end test expected values due to recent changes. commit fc19dd59d34089639cbb2d3dc3c00cf669a8c836 Author: James McDuffie <[email protected]> Date: Mon Oct 18 08:31:49 2021 -0700 Land BRDF corrections to l_rad commit 0db45044aaccfdb949ec05fa1a1dff40ba981c20 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:37:56 2021 -0700 Correctly implement allowing mapping files with empty O2 A-band Preprocessor entries commit 686bd8ed6bbef8b528b7ab6f736a1b25887b6781 Author: James McDuffie <[email protected]> Date: Fri Oct 15 10:12:33 2021 -0700 Updated expected aggregate.sh value. commit d9a76fe14d92cf607601c5c3a1cb8022b782a2c6 Author: Greg McGarragh <[email protected]> Date: Wed Sep 29 07:19:03 2021 -0600 Add unit tests for the scaled coxmunk BRDF implementation. commit a30830a32beaff4804f1985cef0be9bf759ddc21 Author: James McDuffie <[email protected]> Date: Fri Oct 15 09:52:42 2021 -0700 Allow mapping files with empty O2 A-band Preprocessor entries (i.e. aband_file="") commit 32bf015ffed8ffc7a1d486d23043e7da08b9ea9a Author: James McDuffie <[email protected]> Date: Mon Oct 11 16:03:59 2021 -0700 Fix R11 configuration: Solve for 3 EOFs for OCO-2 and 4 for OCO-3 commit 707f5e0cf93b25a4c2a617ec36a521923d2fb752 Author: James McDuffie <[email protected]> Date: Mon Oct 11 11:50:13 2021 -0700 OCO-2 v11 Configuration Updates 1) Use ABSCO 5.2 2) Use the latest ABSCO scalings * Scalings for OCO-3 to come later 3) Remove the SAA box, keep saa_tolerance 4) Set code to use Land/Ocean EOFs by default instead of Glint EOFs. 5) Use Chris's new EOF file 6) Change the values of /Ground/Coxmunk_Albedo/covariance in l2_oco_static_input.h5 to match the correct values in l2_oco3_static_input.h5. 7) Fix aggregation h5py bug in acos_file.py commit e48af4efc2338d664e291cd4a91790695e5ce16f Author: James McDuffie <[email protected]> Date: Mon Sep 27 12:00:33 2021 -0700 Fix unit tests for scaled coxmunk integration. commit b6479dff7b7b760afe57c010a1b02f8c6571aadf Author: Greg McGarragh <[email protected]> Date: Mon Sep 13 05:29:05 2021 -0600 Clean up a few things from the last commit. Bug fix: Fortran argument intent from in to out. Bug fix: Out-of-bounds, Stokes linear combination for reflectance intensity from the GISS Cox and Munk BRDF was for all 4 Stokes coefficients but only three Stokes components are returned by the GISS Cox and Munk code. Implemented the propagation of wind speed uncertainty into the scaled cox-munk reflectance uncertainty. commit ca4ddf3800804111a7bbc4e98aef26cf467435d0 Author: Greg McGarragh <[email protected]> Date: Thu Sep 2 12:35:21 2021 -0600 Fix wind speed parameter input in the LIDORT Cox and Munk BRDF interface in the brdf_functions module. Add an interface to the LRad GISS Cox and Munk BRDF and use this function for the surface reflectance output over ocean glint using the scaled cox-munk treatment. commit 11897a7f6af711dfaf1392640c3112a998a8a8b3 Author: Greg McGarragh <[email protected]> Date: Fri Jul 9 07:58:25 2021 -0600 Initial implementation of the scaled coxmunk BRDF. commit c94b2753c985b3ef4ca7f197349a76e9e21b3f7b Author: James McDuffie <[email protected]> Date: Mon Sep 13 15:44:37 2021 -0700 Fix twostream dummy variable issues. Fix LIDORT brdf counts to correct numbers. Apparently in gfortran 4.8.5 a \ even inside of a comment will cause the next line not to be parsed correctly. This was causing some arguments to be declared as not dummy arguments. The intent was taken out which broke other things. This change puts the intents back and removes the \ causing the initial compiler errors. commit 08b9835996978e9052bbb92567e2c4176b9a9abc Author: James McDuffie <[email protected]> Date: Wed Sep 1 08:44:49 2021 -0700 Update Python bindings for changes to 2stream and SpurrDriver commit 038b82400fd6b00c3ebd908f1ed2ab76017ab430 Author: James McDuffie <[email protected]> Date: Tue Aug 31 09:50:20 2021 -0700 Update commonlib version to 11.0.0, update code version to 11.0.0 commit 41bf472b3c0853c346c7e372dfa766a5b74565f7 Author: James McDuffie <[email protected]> Date: Mon Aug 30 17:00:25 2021 -0700 Update BRDF Functions to work with LIDORT 3.8 commit 96a038b84b34ab14489c18d0617313f82506b91e Author: James McDuffie <[email protected]> Date: Mon Aug 30 16:59:46 2021 -0700 Fixed TwoStreamRt Lua call in config_common.lua commit 4ad2516d3c7e1bd3e708d301a0bb0201881a7b35 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:13:28 2021 -0700 Remove use of specialized lambertian mode from LIDORT/2stream. Instead always use BRDF mode. commit a8e394244b46ca4deae46224196bde642636dc47 Author: James McDuffie <[email protected]> Date: Mon Aug 30 15:11:06 2021 -0700 Update to 2stream version 2.4 commit c05c08a95966b1aa27716d16d36d6e91bc6ea29f Author: James McDuffie <[email protected]> Date: Mon Jul 26 16:40:09 2021 -0700 Change interfaces to use LIDORT 3.8.3. All LIDORT unit tests should be passing. commit 25cd474b33195a60b8f51d19230402f98a699358 Author: James McDuffie <[email protected]> Date: Thu Jun 17 12:30:46 2021 -0700 Remove LIDORT 3.6 from third party and add LIDORT 3.8.3 source commit 2aa88cc0293f368cfd8e6ecf4e4ae47e2f4db383 Author: James McDuffie <[email protected]> Date: Thu Jun 17 10:30:56 2021 -0700 Update code genereration to match Python 3 compatible version from ReFRACtor. Add LIDORT 3.8 generator based on GeoCarb script. commit 824949df18a9fe04782254940ffcbd85a9106b43 Author: Mike <[email protected]> Date: Fri Jun 4 20:27:37 2021 -0700 Update expected results from test runs. commit 859b102a4c0d575357d578ad583ae44a8071aa49 Merge: fa67d08 091c3d9 Author: Mike M Smyth <[email protected]> Date: Fri Jun 4 10:36:20 2021 -0700 Merge pull request #4 from OCO/ticket/2957-l_rad-u_sign_fix Delivery is done, so we can go ahead and merge this in. Fix l_rad coxmunk U-sign conventions commit 091c3d9cc1cfb9da840ba8246f42ec544a59912b Author: James McDuffie <[email protected]> Date: Fri May 14 10:39:00 2021 -0700 The U-sign update is a correction for a mathematical implementation error. Rob Spurr has evaluated this correction against other relevant codes. This update should only impact the Cox-Munk surface. (Should not have any impact on land.) Over ocean - expect improvement to footprint-dependent wind-speed bias. Expect no impact to XCO2. commit fa67d08d86ed4256d6b03c4d6aea78064c29c03c Merge: fe5c33b a988258 Author: Mike <[email protected]> Date: Thu May 13 14:28:48 2021 -0700 Merge remote-tracking branch 'github/master' commit fe5c33bd944bc7ee82409ce949a5859807216a95 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu May 13 21:28:22 2021 +0000 Match git tag B10.3.00_sdos_testing_2 git-svn-id: https://svn/oco/alg/level_2/tags/B10.3.00_sdos_testing_2@36998 816d28dc-4d21-0410-b126-a42eb7b27919 commit b07bb9325d0356b9deb6bd5c5002709fdb4cc8b0 Merge: ea4ab3a 33f25d0 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu May 13 21:26:40 2021 +0000 Update to B10.3.00_sdos_testing_2 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@36997 816d28dc-4d21-0410-b126-a42eb7b27919 commit 33f25d02234e94767fcac0df658a845f0bf7abe5 Author: Mike <[email protected]> Date: Thu May 13 14:25:15 2021 -0700 Update to B10.3.00_sdos_testing_2 git tag. commit a9882587f1c1e7cb1b9d6d3ae0b56542d1589527 Author: Mike <[email protected]> Date: Thu May 13 12:25:30 2021 -0700 Ticket #2954 - Add handling for using SIF 771 if SIF 757 fails. commit 9da6a2c3389faf34fd72199bdd7c5ea08547f397 Author: Mike <[email protected]> Date: Thu May 13 12:20:15 2021 -0700 Update expected results from run test commit 521eba6c405d10f4189e6e6e7ef1aeb863f881da Author: Mike <[email protected]> Date: Thu May 13 11:17:43 2021 -0700 Missed setting water to 4 EOFs for OCO3, fixed that now. commit c8426f8eda56531849af35a6b392f4e30387128b Author: Mike Smyth <[email protected]> Date: Thu May 13 10:27:45 2021 -0700 Ticket #2953 - Add use of 4 EOFs for OCO-3. Note we also closed out Ticket #2952 - update EOF file for OCO3. commit 3c0fe733fc927c57dcfe74690e5a54a2b4c1129c Author: Mike Smyth <[email protected]> Date: Thu May 13 09:36:48 2021 -0700 Update OCO 3 eof file. This is a copy of /home/odell/OCO3_results/ioc/eofs/B10222/eofs/ioc_B10222_QTS_oceanG_sorted_L2.h5 commit 911bd9bdb810ce5a39adbc51cb47b2ebf6f3d3a0 Author: Mike Smyth <[email protected]> Date: Thu May 6 15:27:16 2021 -0700 Ticket #2955 Change A band absco scaling to 1.0005. Note we are currently only doing this for OCO-3, we might also change OCO-2 in the future but that isn't what we currently have here. commit 451e206293079821370b0f568aed820630391376 Author: Mike Smyth <[email protected]> Date: Thu May 6 15:19:26 2021 -0700 Ticket #2951 - Change time.clock to time.process_time in splice_product_files.py program commit cee1445de29ec424354b455fb9241c45e4d8a135 Author: Mike Smyth <[email protected]> Date: Thu May 6 14:44:55 2021 -0700 Ticket #2950 Update Albedo Slope Uncertainty commit 45643450eda62f8b8a70621af97c7be4d8a792c8 Merge: 7bd7464 9335907 Author: Mike <[email protected]> Date: Thu Mar 11 12:05:10 2021 -0800 Merge remote-tracking branch 'github/master' commit 7bd7464f584e61c31d7a9474529db8f4ddd876a5 Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 11 20:03:05 2021 +0000 Match git tag B10.3.00_sdos_testing_1 git-svn-id: https://svn/oco/alg/level_2/tags/B10.3.00_sdos_testing_1@36729 816d28dc-4d21-0410-b126-a42eb7b27919 commit ea4ab3a3067f5d9b8347ad3bdc105cddd5305884 Merge: 204a210 67a63ba Author: smyth <smyth@816d28dc-4d21-0410-b126-a42eb7b27919> Date: Thu Mar 11 20:01:12 2021 +0000 Update to B10.3.00_sdos_testing_1 git tag version git-svn-id: https://svn/oco/alg/level_2/trunk@36728 816d28dc-4d21-0410-b126-a42eb7b27919 commit 67a63ba111ac975569155c3ecb2e738e5960c731 Author: Mike <[email protected]> Date: Thu Mar 11 11:59:29 2021 -0800 Squashed commit of the following: commit 933590742d80def8eaa17b57ee361e19aea61407 Author: Mike Smyth <[email protected]> Date: Thu Feb 25 15:00:54 2021 -0800 Ticket #2902 - Change OCO-3 to use new land/water EOF file Chris produced, so rather than having separate land and water EOF files we have one with a Land and Water group. The EOF file is just a place holder example Chris created, we will need to update this. commit 14f9b52a349c707d99de03c7a239cc8fd8a1f3dc Author: Mike Smyth <[email protected]> Date: Thu Feb 25 14:23:52 2021 -0800 Replace l2_oco3_eof.h5 with test data Chris created. This isn't a final version, but rather is a initial test set. Data came from /home/odell/OCO3_results/ioc/eofs/B10208/eofs/ioc_B10208_QTS_LandWater_sorted_L2.h5 originally. commit 6dcf4f23833d2bf36001308b8d3e201de5192beb Author: Mike Smyth <[email protected]> Date: Thu Feb 25 12:44:31 2021 -0800 Run autotools commit 6d5ff90f4edd5871af81a820800df9b33c420fc3 Author: James McDuffie <[email protected]> Date: Thu Feb 25 12:11:26 2021 -0800 Fix unit test failures due to unit tests Lua config depending on old fixed level pressure level objects. commit 093b3dfea1b10be921c74571dde2288d8ec17857 Author: James McDuffie <[email protected]> Date: Wed Feb 24 19:52:11 2021 -0800 Update /Temperature/Levels/covariance in OCO and OCO3 static input files from source file: IGRA_Covariance_Matrix_Temperature_v1_20210224.h5 derived by Robert Nelson. commit a683e9b559777ffc9299ee0b2cbe732c2f904db3 Author: James McDuffie <[email protected]> Date: Wed Feb 24 17:02:45 2021 -0800 Implement temperature profile retrievals with the TemperatureLevel class. commit 3a50bc94e88a6235f3df8a6afa5dba68784a7374 Author: James McDuffie <[email protected]> Date: Tue Feb 16 10:17:40 2021 -0800 Remove explicit aerosol handling from rail road valley config. commit c909e6e827178ba921f83d5eb91d23d2d1ee098c Author: James McDuffie <[email protected]> Date: Wed Jan 13 14:51:59 2021 -0800 Update expected "run_tests" output due to changes in static input files, specifically a change to /Ground/Coxmunk_Albedo/covariance commit 01fc92299b67e470011de7017315047dc5b151ae Author: Greg McGarragh <[email protected]> Date: Thu Dec 24 06:25:21 2020 -0700 Add support for a quadratic albedo over ocean for OCO-2/3 commit 9ef0e54600a09d82d8e4cd4f8e51877c58e62e67 Author: James McDuffie <[email protected]> Date: Tue Dec 1 15:28:48 2020 -0800 Bump version to 10.3.00 for release. commit 7455c64f9f9cb5f8ae16da17ead5a01e823fb8fd Author: James McDuffie <[email protected]> Date: Tue Dec 1 11:52:33 2020 -0800 Ticket #2873 - Use different EOFs for Land versus Ocean for OCO-3 commit 50639f98b45eb12a70fa0fa66794de6a99c8fce5 Author: James McDuffie <[email protected]> Date: Mon Nov 23 10:16:48 2020 -0800 Remove turning off EOF in RRV config to enable processing with both it on or off controlled during the run set up process. commit 823dd2d0d74006e5f71855fd896c58080e022600 Author: James McDuffie <[email protected]> Date: Mon Aug 24 09:02:30 2020 -0700 Update automake related files for change to add config_oco3_rrv.lua commit a1e076ce1124113069b71604422c7da33660af2c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:46:27 2020 -0700 Add splice tool mapping regenerated from latest L2Agg APF files and supports new fields. commit ab34f375e1e57f890553b5839b2714c457ae9d4c Author: James McDuffie <[email protected]> Date: Mon Aug 24 08:45:55 2020 -0700 Add bits to the make system so that config_oco3_rrv.lua gets installed. commit f854a3c7715f0fc9b67bb10ae4943018498cc93a Author: James McDuffie <[email protected]> Date: Fri Aug 7 10:24:09 2020 -0700 Add RRV config that uses OCO3 base config. commit 2ab033b32044fd3f83b457e622022d1dfc7628c5 Author: Mike Smyth <[email protected]> Date: Wed Jul 29 20:33:04 2020 -0700 Fix mangled Jacobians we were calculated in the ILS with scaling. IlsFunction is optimized to only calculate d[wn_center,scale] rather than dState, with IlsConvolution applying the chain rule to give the full Jacobian. commit c68e999b2dc87e46f101e9be12c81ab9e296531d Merge: 54631a0 a35d860 Author: Mike Smyth <[email protected]> Date: Fri Jul 24 07:59:32 2020 -0700 Merge branch 'ticket/2805_fit_stretch_ils' commit a35d860f5d9223f2e3378a152d07733ed7927dc3 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 20:45:45 2020 -0700 Fix a number of swig errors we caught with buildbot tests. commit 4da9974c5538bd163dc70ecd77ce7430467a80b9 Author: Mike Smyth <[email protected]> Date: Thu Jul 23 12:01:47 2020 -0700 Ticket #2805 - Fit stretch parameters to the ILS. Clean up the ILSscaling code. Have clean unit tests and run_tests. commit 7f1c81c1308a97cb39cab8f9001d42c77acd4fd7 Author: Mike Smyth <[email protected]> Date: Wed Jul 22 16:46:12 2020 -0700 Continue working on integrating code. This is currently broken, but checkpoint what we have. commit db4d656afd4f42b7be4ce785e46d6072f87d67d7 Author: Mike Smyth <[email protected]> Date: Mon Jun 29 13:44:23 2020 -0700 Catch the changeset from geocarb. This hasn't been tested yet, and it may have stuff that we want to change. But checkin this base. Add option to retrieve an ILS stretch factor per band. Option is: config.fm.instrument.ils_func.retrieve_bands = {true, true, true, true} where in this case there are 4 bands. commit 54631a0b89d56bde0b5d31c9a8a59e1fe0cd761c Author: Mike <[email protected]> Date: Fri Apr 24 09:24:43 2020 -0700 Fix a bug Fabiano found, using obsolete option in numpy.zeros commit 933590742d80def8eaa17b57ee361e19aea61407 Author: Mike Smyth <[email protected]> Date: Thu Feb 25 15:00:54 2021 -0800 Ticket #2902 - Change OCO-3 to use new land/water EOF file Chris produced, so rather than having separate land and water EOF files we have one with a Land and Water group. The EOF file is just a place holder example Chris created, we will need to update this. commit 14f9b52a349c707d99de03c7a239cc8fd8a1f3dc Author: Mike Smyth <[email protected]> Date: Thu Feb 25 14:23:52 2021 -0800 Replace l2_oco3_eof.h5 with test data Chris created. This isn't a final version, but rather is a initial test set. Data came from /home/odell/OCO3_results/ioc/eofs/B10208/eofs/ioc_B10208_QTS_LandWater_sorted_L2.h5 originally. commit 6dcf4f23833d2bf36001308b8d3e201de5192beb Author: Mike Smyth <[email protected]> Date: Thu Feb 25 12:44:31 2021 -0800 Run autotools commit 6d5ff90f4edd5871af81a820800df9b33c420fc3 Author: James McDuffie <[email protected]> Date: Thu Feb 25 12:11:26 2021 -0800 Fix unit test failures due to unit tests Lua config depending on old fixed level pressure level objects. commit 093b3dfea1b10be921c74571dde2288d8ec17857 Author: James McDuffie <[email protected]> Date: Wed Feb 24 19:52:11 2021 -0800 Update /Temperature/Levels/covariance in OCO and OCO3 static input files from source file: IGRA_Covariance_Matrix_Temperature_v1_20210224.h5 derived by Robert Nelson. commit a683e9b559777ffc9299ee0b2cbe732c2f904db3 Author: James McDuffie <[email protected]> Date: Wed Feb 24 17:02:45 2021 -0800 Implement temperature profile retrievals with the TemperatureLevel class. commit 3a50bc94e88a6235f3df8a6afa5dba68784a7374 Author: James McDuffie <[email protected]> Date: Tue Feb 16 10:17:40 2021 -0800 Remove explicit aerosol handling from rail road valley config. commit c909e6e827178ba921f83d5eb91d23d2d1ee098c Author: James McDuffie <[email protected]> Date: Wed Jan 13 14:51:59 2021 -0800 Update expected "run_tests" output due to changes in static input files, specifically a change to /Ground/Coxmunk_Albedo/covariance commit 01fc92299b67e470011de7017315047dc5b151ae Author: Greg McGarragh <[email protected]> Date: Thu Dec 24 06:25:21 2020 -0700 Add support for a quadratic albedo over ocean for OCO-2/3 commit 9ef0e54600a09d82d8e4cd4f8e51877c58e62e67 Author: James McDuffie <[email protected]> Date: Tue Dec 1 15:28:48 2020 -0800 Bump version to 10.3.00 for release. commit 7455c64f9f9cb5f8ae16da17ead5a01e823fb8fd Author: James McDuffie <[email protected]> Date: Tue Dec 1 11:52:33 2020 -0800 Ticket #2873 - Use different EOFs for Land versus Ocean for OCO-3 commit 50639f98b45eb12a70fa0fa66794de6a99c8fce5 Author: James McDuffie <[email protected]> Date: Mon Nov 23 10:16:48 2020 -0800 Remove turning off EOF in RRV config to enable processing with both it on or off controlled during the run set up process. commit 823dd2d0d74006e5f71855fd896c58080e022600 Author: James McDuffie <[email protected]> Date: Mon Aug 24 09:02:30 2020 -0700 Update automake related files for change to…
Hi,
I am still working this version because meet some environment errors during compiling ReFRACtor on our server...
For this version, I have passed all test run, now I am trying to work on the python wrapper.
I following the instruction here http://nasa.github.io/RtRetrievalFrameworkDoc/python_wrappers.html.
from full_physics import *
But got "NameError: name 'L2FpConfigurationLua' is not defined",
I check the full_physics directory, (for me is /home/thl/04.OCO2/RtRetrievalFramework/build_fp/install/lib/python2.7/site-packages/full_physics
). There are no function called 'L2FpConfigurationLua'.
However, I can find this function under "full_physics_swig" directory,
Then I try to import full_physics_swig in python, then got following error:
import full_physics_swig as fps
Traceback (most recent call last):
File "", line 1, in
File "/home/thl/04.OCO2/RtRetrievalFramework/build_fp/install/lib/python2.7/site-packages/full_physics_swig/init.py", line 9, in
exec('from .%s import *' % mname)
File "", line 1, in
File "/home/thl/04.OCO2/RtRetrievalFramework/build_fp/install/lib/python2.7/site-packages/full_physics_swig/init.py", line 9, in
exec('from .%s import *' % mname)
File "", line 1, in
File "/home/thl/04.OCO2/RtRetrievalFramework/build_fp/install/lib/python2.7/site-packages/full_physics_swig/oco_noise_model.py", line 32, in
_oco_noise_model = swig_import_helper()
File "/home/thl/04.OCO2/RtRetrievalFramework/build_fp/install/lib/python2.7/site-packages/full_physics_swig/oco_noise_model.py", line 24, in swig_import_helper
import _oco_noise_model
ImportError: No module named _oco_noise_model
Any suggestions?
Thanks,
Tianhao
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