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fix fnirs channel name cropping in topomap combination #11138

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fix fnirs channel name cropping in topomap combination #11138

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2166e18
line to fix fnirs channel name cropping in topomap combination
JohnGriffiths Sep 6, 2022
5275e3d
switched from array to list for the assembly part, on AG's recommenda…
JohnGriffiths Sep 7, 2022
d31a7f4
Update mne/viz/topomap.py
JohnGriffiths Oct 9, 2022
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5 changes: 2 additions & 3 deletions mne/viz/topomap.py
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Original file line number Diff line number Diff line change
Expand Up @@ -167,11 +167,10 @@ def _average_fnirs_overlaps(info, ch_type, sphere):
# first listed channel is the one to be replaced with merge
overlapping_set = [chs[i]['ch_name'] for i in
np.where(overlapping_mask[chan_idx])[0]]
overlapping_set = np.insert(overlapping_set, 0,
(chs[chan_idx]['ch_name']))
overlapping_set.insert(0,chs[chan_idx]['ch_name'])
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overlapping_channels.append(overlapping_set)
channels_to_exclude.append(overlapping_set[1:])

overlapping_set = np.array(overlapping_set)
exclude = list(itertools.chain.from_iterable(channels_to_exclude))
[exclude.append(bad) for bad in info['bads']]
picks = pick_types(info, meg=False, ref_meg=False, fnirs=ch_type,
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