This package is a collection of functions for working with the TBESC2 TO 1 data (specifically, the downloadable extracts from DMS). The functions can be broken down into three groups:
These functions take the raw .csv extracts from DMS and produce an R list of data.frames, each corresponding to a raw .csv file. Those data.frames should generally have well-formated variables (character-coded instead of numeric, dates are Dates, datetimes are POSIX, StudyId is available on every table).
clean_to1 is the only function you need; it applies the others appropriately.
These functions underlie the TO 1 auto-QA report (https://github.com/mmparker/to1report); they can definitely be used alone but their outputs are oriented to that end.
These functions provide standalone functionality for study staff.
For example, gen_consent_checklist produces a data.frame with a record
for each theoretically-existing consent document for all enrolled particpants
and open fields for each signature that should be on them. Write it out to
.csv, tidy up in Excel, and print.