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Add Western USA Live Fuel Moisture Dataset (#1262)
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* basic working version

* format data.py

* add test for features variables

* pyupgrade

* add docs

* additional doc

* forgot pdb

* requested changes

* ignore pd return type

* fill coverage gap

* split dataset name for docs

* Add missing column

* Fix error list

---------

Co-authored-by: Adam J. Stewart <[email protected]>
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@nilsleh @adamjstewart
nilsleh and adamjstewart authored Apr 19, 2023
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5 changes: 5 additions & 0 deletions docs/api/datasets.rst
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Expand Up @@ -344,6 +344,11 @@ VHR-10

.. autoclass:: VHR10

Western USA Live Fuel Moisture
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. autoclass:: WesternUSALiveFuelMoisture

xView2
^^^^^^

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1 change: 1 addition & 0 deletions docs/api/non_geo_datasets.csv
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Expand Up @@ -34,5 +34,6 @@ Dataset,Task,Source,# Samples,# Classes,Size (px),Resolution (m),Bands
`USAVars`_,R,NAIP Aerial,100K,-,-,4,"RGB, NIR"
`Vaihingen`_,S,Aerial,33,6,"1,281--3,816",0.09,RGB
`VHR-10`_,I,"Google Earth, Vaihingen",800,10,"358--1,728",0.08--2,RGB
`Western USA Live Fuel Moisture`_,R,"Landsat8, Sentinel-1",2615,-,-,-,-
`xView2`_,CD,Maxar,"3,732",4,"1,024x1,024",0.8,RGB
`ZueriCrop`_,"I, T",Sentinel-2,116K,48,24x24,10,MSI
223 changes: 223 additions & 0 deletions tests/data/western_usa_live_fuel_moisture/data.py
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#!/usr/bin/env python3

# Copyright (c) Microsoft Corporation. All rights reserved.
# Licensed under the MIT License.

import hashlib
import json
import os
import shutil

NUM_SAMPLES = 3


data_dir = "su_sar_moisture_content"

LABELS = {
"type": "Feature",
"properties": {
"percent(t)": 132.6666667,
"site": "Blackstone",
"date": "6/30/15",
"slope(t)": 0.599961042,
"elevation(t)": 1522.0,
"canopy_height(t)": 0.0,
"forest_cover(t)": 130.0,
"silt(t)": 36.0,
"sand(t)": 38.0,
"clay(t)": 26.0,
"vv(t)": -12.80108143,
"vh(t)": -20.86413967,
"red(t)": 2007.5,
"green(t)": 1669.5,
"blue(t)": 1234.5,
"swir(t)": 3226.5,
"nir(t)": 2764.5,
"ndvi(t)": 0.158611467,
"ndwi(t)": -0.07713057,
"nirv(t)": 438.5596345,
"vv_red(t)": -0.006376628,
"vv_green(t)": -0.007667614,
"vv_blue(t)": -0.010369446,
"vv_swir(t)": -0.003967482,
"vv_nir(t)": -0.004630523,
"vv_ndvi(t)": -80.70716267,
"vv_ndwi(t)": 165.9663796,
"vv_nirv(t)": -0.029188919,
"vh_red(t)": -0.010393096,
"vh_green(t)": -0.012497238,
"vh_blue(t)": -0.016900883,
"vh_swir(t)": -0.006466493,
"vh_nir(t)": -0.007547166,
"vh_ndvi(t)": -131.5424422,
"vh_ndwi(t)": 270.5041557,
"vh_nirv(t)": -0.047574236,
"vh_vv(t)": -8.063058239,
"slope(t-1)": 0.599961042,
"elevation(t-1)": 1522.0,
"canopy_height(t-1)": 0.0,
"forest_cover(t-1)": 130.0,
"silt(t-1)": 36.0,
"sand(t-1)": 38.0,
"clay(t-1)": 26.0,
"vv(t-1)": -12.93716855,
"vh(t-1)": -20.92368901,
"red(t-1)": 1792.0,
"green(t-1)": 1490.0,
"blue(t-1)": 1102.5,
"swir(t-1)": 3047.0,
"nir(t-1)": 2574.0,
"ndvi(t-1)": 0.179116009,
"ndwi(t-1)": -0.084146807,
"nirv(t-1)": 461.0691997,
"vv_red(t-1)": -0.007219402,
"vv_green(t-1)": -0.008682663,
"vv_blue(t-1)": -0.011734393,
"vv_swir(t-1)": -0.004245871,
"vv_nir(t-1)": -0.005026095,
"vv_ndvi(t-1)": -72.22787422,
"vv_ndwi(t-1)": 153.7452097,
"vv_nirv(t-1)": -0.02805906,
"vh_red(t-1)": -0.011676166,
"vh_green(t-1)": -0.014042744,
"vh_blue(t-1)": -0.018978403,
"vh_swir(t-1)": -0.00686698,
"vh_nir(t-1)": -0.008128861,
"vh_ndvi(t-1)": -116.8164094,
"vh_ndwi(t-1)": 248.6569562,
"vh_nirv(t-1)": -0.0453808,
"vh_vv(t-1)": -7.986520458,
"slope(t-2)": 0.599961042,
"elevation(t-2)": 1522.0,
"canopy_height(t-2)": 0.0,
"forest_cover(t-2)": 130.0,
"silt(t-2)": 36.0,
"sand(t-2)": 38.0,
"clay(t-2)": 26.0,
"vv(t-2)": -13.07325567,
"vh(t-2)": -20.98323835,
"red(t-2)": 1721.5,
"green(t-2)": 1432.0,
"blue(t-2)": 1056.5,
"swir(t-2)": 2950.0,
"nir(t-2)": 2476.0,
"ndvi(t-2)": 0.179768568,
"ndwi(t-2)": -0.087357002,
"nirv(t-2)": 445.0984812,
"vv_red(t-2)": -0.007594107,
"vv_green(t-2)": -0.009129368,
"vv_blue(t-2)": -0.012374118,
"vv_swir(t-2)": -0.004431612,
"vv_nir(t-2)": -0.00527999,
"vv_ndvi(t-2)": -72.72270011,
"vv_ndwi(t-2)": 149.6532084,
"vv_nirv(t-2)": -0.029371603,
"vh_red(t-2)": -0.012188927,
"vh_green(t-2)": -0.014653099,
"vh_blue(t-2)": -0.019861087,
"vh_swir(t-2)": -0.007112962,
"vh_nir(t-2)": -0.008474652,
"vh_ndvi(t-2)": -116.7236217,
"vh_ndwi(t-2)": 240.2009889,
"vh_nirv(t-2)": -0.047142912,
"vh_vv(t-2)": -7.909982677,
"slope(t-3)": 0.599961042,
"elevation(t-3)": 1522.0,
"canopy_height(t-3)": 0.0,
"forest_cover(t-3)": 130.0,
"silt(t-3)": 36.0,
"sand(t-3)": 38.0,
"clay(t-3)": 26.0,
"vv(t-3)": -12.35794964,
"vh(t-3)": -20.25746909,
"red(t-3)": 1367.333333,
"green(t-3)": 1151.0,
"blue(t-3)": 827.3333333,
"swir(t-3)": 2349.333333,
"nir(t-3)": 2051.0,
"ndvi(t-3)": 0.216978329,
"ndwi(t-3)": -0.050717071,
"nirv(t-3)": 413.3885932,
"vv_red(t-3)": -0.009037993,
"vv_green(t-3)": -0.010736707,
"vv_blue(t-3)": -0.014937087,
"vv_swir(t-3)": -0.005260194,
"vv_nir(t-3)": -0.006025329,
"vv_ndvi(t-3)": -56.95476465,
"vv_ndwi(t-3)": 243.6644995,
"vv_nirv(t-3)": -0.029894269,
"vh_red(t-3)": -0.014815311,
"vh_green(t-3)": -0.017599886,
"vh_blue(t-3)": -0.024485257,
"vh_swir(t-3)": -0.008622646,
"vh_nir(t-3)": -0.009876874,
"vh_ndvi(t-3)": -93.36171601,
"vh_ndwi(t-3)": 399.4211186,
"vh_nirv(t-3)": -0.049003454,
"vh_vv(t-3)": -7.899519455,
},
"geometry": {"type": "Point", "coordinates": [-115.8855556, 42.44111111]},
}

STAC = {
"assets": {
"documentation": {
"href": "../_common/documentation.pdf",
"type": "application/pdf",
},
"labels": {"href": "labels.geojson", "type": "application/geo+json"},
"training_features_descriptions": {
"href": "../_common/training_features_descriptions.csv",
"title": "Training Features Descriptions",
"type": "text/csv",
},
},
"bbox": [-115.8855556, 42.44111111, -115.8855556, 42.44111111],
"collection": "su_sar_moisture_content",
"geometry": {"coordinates": [-115.8855556, 42.44111111], "type": "Point"},
"id": "su_sar_moisture_content_0001",
"links": [
{"href": "../collection.json", "rel": "collection"},
{"href": "../collection.json", "rel": "parent"},
],
"properties": {
"datetime": "2015-06-30T00:00:00Z",
"label:description": "",
"label:properties": ["percent(t)"],
"label:type": "vector",
},
"stac_extensions": ["label"],
"stac_version": "1.0.0-beta.2",
"type": "Feature",
}


def create_file(path: str) -> None:
label_path = os.path.join(path, "labels.geojson")
with open(label_path, "w") as f:
json.dump(LABELS, f)

stac_path = os.path.join(path, "stac.json")
with open(stac_path, "w") as f:
json.dump(STAC, f)


if __name__ == "__main__":
# Remove old data
if os.path.isdir(data_dir):
shutil.rmtree(data_dir)

os.makedirs(os.path.join(os.getcwd(), data_dir))

for i in range(NUM_SAMPLES):
sample_dir = os.path.join(data_dir, data_dir + f"_{i}")
os.makedirs(sample_dir)
create_file(sample_dir)

# Compress data
shutil.make_archive(data_dir, "gztar", ".", data_dir)

# Compute checksums
with open(data_dir + ".tar.gz", "rb") as f:
md5 = hashlib.md5(f.read()).hexdigest()
print(f"{data_dir}.tar.gz: {md5}")
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1 change: 1 addition & 0 deletions ..._fuel_moisture/su_sar_moisture_content/su_sar_moisture_content_0/labels.geojson
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{"type": "Feature", "properties": {"percent(t)": 132.6666667, "site": "Blackstone", "date": "6/30/15", "slope(t)": 0.599961042, "elevation(t)": 1522.0, "canopy_height(t)": 0.0, "forest_cover(t)": 130.0, "silt(t)": 36.0, "sand(t)": 38.0, "clay(t)": 26.0, "vv(t)": -12.80108143, "vh(t)": -20.86413967, "red(t)": 2007.5, "green(t)": 1669.5, "blue(t)": 1234.5, "swir(t)": 3226.5, "nir(t)": 2764.5, "ndvi(t)": 0.158611467, "ndwi(t)": -0.07713057, "nirv(t)": 438.5596345, "vv_red(t)": -0.006376628, "vv_green(t)": -0.007667614, "vv_blue(t)": -0.010369446, "vv_swir(t)": -0.003967482, "vv_nir(t)": -0.004630523, "vv_ndvi(t)": -80.70716267, "vv_ndwi(t)": 165.9663796, "vv_nirv(t)": -0.029188919, "vh_red(t)": -0.010393096, "vh_green(t)": -0.012497238, "vh_blue(t)": -0.016900883, "vh_swir(t)": -0.006466493, "vh_nir(t)": -0.007547166, "vh_ndvi(t)": -131.5424422, "vh_ndwi(t)": 270.5041557, "vh_nirv(t)": -0.047574236, "vh_vv(t)": -8.063058239, "slope(t-1)": 0.599961042, "elevation(t-1)": 1522.0, "canopy_height(t-1)": 0.0, "forest_cover(t-1)": 130.0, "silt(t-1)": 36.0, "sand(t-1)": 38.0, "clay(t-1)": 26.0, "vv(t-1)": -12.93716855, "vh(t-1)": -20.92368901, "red(t-1)": 1792.0, "green(t-1)": 1490.0, "blue(t-1)": 1102.5, "swir(t-1)": 3047.0, "nir(t-1)": 2574.0, "ndvi(t-1)": 0.179116009, "ndwi(t-1)": -0.084146807, "nirv(t-1)": 461.0691997, "vv_red(t-1)": -0.007219402, "vv_green(t-1)": -0.008682663, "vv_blue(t-1)": -0.011734393, "vv_swir(t-1)": -0.004245871, "vv_nir(t-1)": -0.005026095, "vv_ndvi(t-1)": -72.22787422, "vv_ndwi(t-1)": 153.7452097, "vv_nirv(t-1)": -0.02805906, "vh_red(t-1)": -0.011676166, "vh_green(t-1)": -0.014042744, "vh_blue(t-1)": -0.018978403, "vh_swir(t-1)": -0.00686698, "vh_nir(t-1)": -0.008128861, "vh_ndvi(t-1)": -116.8164094, "vh_ndwi(t-1)": 248.6569562, "vh_nirv(t-1)": -0.0453808, "vh_vv(t-1)": -7.986520458, "slope(t-2)": 0.599961042, "elevation(t-2)": 1522.0, "canopy_height(t-2)": 0.0, "forest_cover(t-2)": 130.0, "silt(t-2)": 36.0, "sand(t-2)": 38.0, "clay(t-2)": 26.0, "vv(t-2)": -13.07325567, "vh(t-2)": -20.98323835, "red(t-2)": 1721.5, "green(t-2)": 1432.0, "blue(t-2)": 1056.5, "swir(t-2)": 2950.0, "nir(t-2)": 2476.0, "ndvi(t-2)": 0.179768568, "ndwi(t-2)": -0.087357002, "nirv(t-2)": 445.0984812, "vv_red(t-2)": -0.007594107, "vv_green(t-2)": -0.009129368, "vv_blue(t-2)": -0.012374118, "vv_swir(t-2)": -0.004431612, "vv_nir(t-2)": -0.00527999, "vv_ndvi(t-2)": -72.72270011, "vv_ndwi(t-2)": 149.6532084, "vv_nirv(t-2)": -0.029371603, "vh_red(t-2)": -0.012188927, "vh_green(t-2)": -0.014653099, "vh_blue(t-2)": -0.019861087, "vh_swir(t-2)": -0.007112962, "vh_nir(t-2)": -0.008474652, "vh_ndvi(t-2)": -116.7236217, "vh_ndwi(t-2)": 240.2009889, "vh_nirv(t-2)": -0.047142912, "vh_vv(t-2)": -7.909982677, "slope(t-3)": 0.599961042, "elevation(t-3)": 1522.0, "canopy_height(t-3)": 0.0, "forest_cover(t-3)": 130.0, "silt(t-3)": 36.0, "sand(t-3)": 38.0, "clay(t-3)": 26.0, "vv(t-3)": -12.35794964, "vh(t-3)": -20.25746909, "red(t-3)": 1367.333333, "green(t-3)": 1151.0, "blue(t-3)": 827.3333333, "swir(t-3)": 2349.333333, "nir(t-3)": 2051.0, "ndvi(t-3)": 0.216978329, "ndwi(t-3)": -0.050717071, "nirv(t-3)": 413.3885932, "vv_red(t-3)": -0.009037993, "vv_green(t-3)": -0.010736707, "vv_blue(t-3)": -0.014937087, "vv_swir(t-3)": -0.005260194, "vv_nir(t-3)": -0.006025329, "vv_ndvi(t-3)": -56.95476465, "vv_ndwi(t-3)": 243.6644995, "vv_nirv(t-3)": -0.029894269, "vh_red(t-3)": -0.014815311, "vh_green(t-3)": -0.017599886, "vh_blue(t-3)": -0.024485257, "vh_swir(t-3)": -0.008622646, "vh_nir(t-3)": -0.009876874, "vh_ndvi(t-3)": -93.36171601, "vh_ndwi(t-3)": 399.4211186, "vh_nirv(t-3)": -0.049003454, "vh_vv(t-3)": -7.899519455}, "geometry": {"type": "Point", "coordinates": [-115.8855556, 42.44111111]}}
1 change: 1 addition & 0 deletions ...estern_usa_live_fuel_moisture/su_sar_moisture_content/su_sar_moisture_content_0/stac.json
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{"assets": {"documentation": {"href": "../_common/documentation.pdf", "type": "application/pdf"}, "labels": {"href": "labels.geojson", "type": "application/geo+json"}, "training_features_descriptions": {"href": "../_common/training_features_descriptions.csv", "title": "Training Features Descriptions", "type": "text/csv"}}, "bbox": [-115.8855556, 42.44111111, -115.8855556, 42.44111111], "collection": "su_sar_moisture_content", "geometry": {"coordinates": [-115.8855556, 42.44111111], "type": "Point"}, "id": "su_sar_moisture_content_0001", "links": [{"href": "../collection.json", "rel": "collection"}, {"href": "../collection.json", "rel": "parent"}], "properties": {"datetime": "2015-06-30T00:00:00Z", "label:description": "", "label:properties": ["percent(t)"], "label:type": "vector"}, "stac_extensions": ["label"], "stac_version": "1.0.0-beta.2", "type": "Feature"}
1 change: 1 addition & 0 deletions ..._fuel_moisture/su_sar_moisture_content/su_sar_moisture_content_1/labels.geojson
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1 change: 1 addition & 0 deletions ...estern_usa_live_fuel_moisture/su_sar_moisture_content/su_sar_moisture_content_1/stac.json
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{"assets": {"documentation": {"href": "../_common/documentation.pdf", "type": "application/pdf"}, "labels": {"href": "labels.geojson", "type": "application/geo+json"}, "training_features_descriptions": {"href": "../_common/training_features_descriptions.csv", "title": "Training Features Descriptions", "type": "text/csv"}}, "bbox": [-115.8855556, 42.44111111, -115.8855556, 42.44111111], "collection": "su_sar_moisture_content", "geometry": {"coordinates": [-115.8855556, 42.44111111], "type": "Point"}, "id": "su_sar_moisture_content_0001", "links": [{"href": "../collection.json", "rel": "collection"}, {"href": "../collection.json", "rel": "parent"}], "properties": {"datetime": "2015-06-30T00:00:00Z", "label:description": "", "label:properties": ["percent(t)"], "label:type": "vector"}, "stac_extensions": ["label"], "stac_version": "1.0.0-beta.2", "type": "Feature"}
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