pin micom version

q2-micom-linux.yml → q2-micom.yml

@@ -3,11 +3,11 @@ channels:
   - bioconda
 dependencies:
   - cobra
+  - optlang>=1.5.1
   - rich
   - jinja2
   - python-symengine>=0.6.1
   - pip
   - osqp>=0.6.2
   - pip:
     - q2-micom
-    - highspy>=1.5.3

setup.cfg

@@ -12,7 +12,7 @@ long_description = file: README.md
 long_description_content_type = text/markdown
 license = Apache License 2.0
 url = https://github.com/micom-dev/q2-micom
-classifiers = 
+classifiers =
 	Development Status :: 4 - Beta
 	Intended Audience :: Science/Research
 	Topic :: Scientific/Engineering :: Bio-Informatics
@@ -22,7 +22,7 @@ classifiers =
 	Programming Language :: Python :: 3.9
 	Programming Language :: Python :: 3.10
 	Programming Language :: Python :: 3.11
-keywords = 
+keywords =
 	microbiome
 	modeling
 	metabolism
@@ -32,25 +32,25 @@ keywords =
 zip_safe = False
 packages = find:
 python_requires = >=3.6
-install_requires = 
-	cobra>=0.18.1
-	micom>=0.33.1
+install_requires =
+	cobra>=0.29.0
+	micom>=0.34.1,<0.35
 	jinja2>=2.10.3
-	qiime2>=2021.2
+	qiime2>=2023.2
 	rich>=6.0
 	pandas>=1.0
-tests_require = 
+tests_require =
 	coverage
 	pytest
 	pytest-cov
 	flake8
 
 [options.package_data]
-q2_micom = 
+q2_micom =
 	citations.bib
 
 [options.entry_points]
-qiime2.plugins = 
+qiime2.plugins =
 	q2-micom = q2_micom.plugin_setup:plugin
 
 [bumpversion:file:setup.py]
@@ -62,7 +62,7 @@ search = __version__ = "{current_version}"
 replace = __version__ = "{new_version}"
 
 [tool:pytest]
-filterwarnings = 
+filterwarnings =
 	ignore::DeprecationWarning
 	ignore::FutureWarning
 
@@ -75,15 +75,15 @@ branch = True
 omit = q2_micom/tests/*
 
 [coverage:report]
-exclude_lines = 
+exclude_lines =
 	pragma: no cover
-	
+
 	def __repr__
 	if self\.debug
-	
+
 	raise AssertionError
 	raise NotImplementedError
-	
+
 	if 0:
 	if __name__ == .__main__.:
 ignore_errors = True