Code

Updating demo notebook for training #100

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Merged

edyoshikun merged 43 commits intomainmehta-lab/VisCy:mainfrom update_dlmblmehta-lab/VisCy:update_dlmblCopy head branch name to clipboardJul 19, 2024

Commits

Commits on Jun 20, 2024

• first pass on VSCyto2D demo

  edyoshikun

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• updating notebooks

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Commits on Jul 3, 2024

• Merge branch 'main' into update_dlmbl

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Commits on Jul 4, 2024

• draft modifications updating 2DUnet to UNeXT2

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Commits on Jul 5, 2024

• editing solution

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Commits on Jul 6, 2024

• modifying to relative paths based on setup.sh download paths.

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Commits on Jul 8, 2024

• small edits

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• fixing video and adding todo comment for students to switch the top_dir.

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• updating the readme and setup.sh

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• addressing some typos

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Commits on Jul 9, 2024

• html to md (#106)

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• typographical

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• nits

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Commits on Jul 11, 2024

• -adding alias for UNeXt2_2D

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• ruff and black

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Commits on Jul 16, 2024

• edit tensorboard instructions

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• clean up the order for Part 2: fluor2phase, training call follows model construction

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Commits on Jul 17, 2024

• restructured fluor2phase sections

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• Text edits

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• markdown and html fixes

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• merge import blocks

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• add line break

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• tweak typesetting

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• use the actual pi

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• rotate 'around'

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• addaptive figure size

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• remove division

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• FOVs -> samples

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• line breaks

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• remove duplicate function and more line breaks

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• send data to device

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• fix multisamping in example data for graphing

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• fix definition location

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• fix device and markdown block

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• reordering variable that prevented fluor2phase not to run if previous cells were not run

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Commits on Jul 18, 2024

• fixing vscode and juypter readability

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• remove old debug script

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• fix syntax

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• fix hyperlink

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• fix batch size story

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• remove emojis

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Commits on Jul 19, 2024

• making 3D_UNeXt2 example work

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• pointing to config files from 0.1.0 release

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