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Update python versions in CI #197

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merged 7 commits into from
Oct 30, 2022
Merged

Update python versions in CI #197

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af99637
Update python versions in CI
mdshw5 Oct 25, 2022
8b5d60e
Update pypi.yml
mdshw5 Oct 25, 2022
340e235
Update main.yml
mdshw5 Oct 26, 2022
9fb3ace
Exclude macOS due to missing liblzma
mdshw5 Oct 26, 2022
8682250
Update main.yml
mdshw5 Oct 26, 2022
b9dbbee
Update main.yml
mdshw5 Oct 27, 2022
b76315b
Update main.yml
mdshw5 Oct 30, 2022
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22 changes: 18 additions & 4 deletions .github/workflows/main.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -12,9 +12,20 @@ jobs:
runs-on: ${{ matrix.os }}

strategy:
fail-fast: false
max-parallel: 10
matrix:
python: [3.7.12, 3.8.12, 3.9.10, 3.10.2]
python-version: ['3.11', '3.10', '3.9', '3.8', '3.7']
os: [ubuntu-latest, macos-latest]
exclude:
# mac os: exclude all but the last two (available) python releases
- os: macos-latest
python-version: 3.8
- os: macos-latest
python-version: 3.7
# mac os: exclude python 3.11 since it's not yet available for runners
- os: macos-latest
python-version: 3.11

steps:
- name: Checkout
Expand All @@ -27,12 +38,15 @@ jobs:
uses: actions/setup-python@v2
with:
python-version: ${{ matrix.python }}

- name: Install Python tools
run: python3 -m pip install --upgrade pip

- name: Install python packages
run: pip install -r dev-requirements.txt
run: python3 -m pip install -r dev-requirements.txt

- name: Install package
run: python setup.py install
run: python3 -m pip install -e .

- name: Cache test data
uses: actions/cache@v2
Expand All @@ -41,7 +55,7 @@ jobs:
key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('tests/data/*') }}

- name: Download test data
run: python tests/data/download_gene_fasta.py
run: python3 tests/data/download_gene_fasta.py

- name: Run tests
run: pytest --cov=pyfaidx --cov-report=xml tests
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5 changes: 4 additions & 1 deletion .github/workflows/pypi.yml
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Original file line number Diff line number Diff line change
@@ -1,5 +1,8 @@
name: Package Builds
on: push
on:
push:
branches:
- master

jobs:
build-n-publish:
Expand Down