Reindex file if time stamp on fasta is newer than on index?

[deannachurch]

It would be great if the index were automatically recreated if the fasta file has a new time stamp than the .fai file. I just did this test as we had to rebuild a fasta we are using and reindexing did not occur.

thanks for considering!

[mdshw5]

It's a good idea and something I can definitely put in the next release. Thanks for the suggestion!

On Mar 1, 2015, at 12:00 AM, Deanna Church [email protected] wrote:

It would be great if the index were automatically recreated if the fasta file has a new time stamp than the .fai file. I just did this test as we had to rebuild a fasta we are using and reindexing did not occur.

thanks for considering!

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[deannachurch]

Thanks for the quick response! This is great.

[mdshw5]

After the new version passes integration tests (in an hour or so), it will be released to PyPI and you should be able to upgrade to it using pip install --upgrade pyfaidx. Please let me know if you encounter any issues, or have any other ideas!