To pull this project from git hub to your local system:

$ git clone [email protected]:PacificBiosciences/refactored_blasr.git --recursive

To sync your code with the latest git code base:

$ make pullfromgit

To specify HDF5 headers and lib on your system, please edit git_blasr_common.mk

To make 'blasr' only:

$ make blasr

To view blasr simple manual.

To compile all tools, including blasr, pls2fasta, loadPusles, sawriter:

$ make 

To clean all compiled tools and lib:

$ make clean

To clean blasr and compiled lib:

$ make clean_blasr

For developers:

$ make debug