Add script for manual defects.

python/lsst/obs/lsst/script/write_manual_defects.py

@@ -0,0 +1,61 @@
+# This file is part of obs_lsst.
+#
+# Developed for the LSST Data Management System.
+# This product includes software developed by the LSST Project
+# (https://www.lsst.org).
+# See the COPYRIGHT file at the top-level directory of this distribution
+# for details of code ownership.
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+from lsst.daf.butler import Butler
+from lsst.ip.isr import Defects
+import lsst.obs.lsst as ol
+
+# Read and put new manual defects into the butler.
+# We have to use embargo_old because this is where the CP needed for defects are.
+camera_name     = 'LSSTComCam'
+butler = Butler('/repo/embargo_old', writeable=True)
+collection_output = 'LSSTComCam/calib/DM-47365/addManualDefects/manualDefects.20241121c/run'
+butler.registry.registerRun(collection_output)
+
+cc = ol.LsstComCam
+camera = cc.getCamera()
+for det in camera:
+    detId = det.getId()
+    detName = det.getName()
+
+    # This is only valid for LSSTComCam which has a single raft
+    manual_defects = Defects.readText('obs_lsst_data/comCam/manual_defects/r22_s'+detName[5:]+'/20241120T000000.ecsv')
+
+    butler.put(manual_defects, "manual_defects",
+            instrument="LSSTComCam", detector=detId,
+            run=collection_output)
+
+
+'''
+export INSTRUMENT='LSSTComCam'
+export FLAT_BOOTSTRAP_RUN=$INSTRUMENT/calib/DM-46360/isrTaskLSST/flatBootstrapGen.20240926a/run
+export DARK_BOOTSTRAP_RUN=$INSTRUMENT/calib/DM-46360/isrTaskLSST/darkBootstrapGen.20240926a/run
+export BIAS_BOOTSTRAP_RUN=$INSTRUMENT/calib/DM-46360/isrTaskLSST/biasBootstrapGen.20240926a/run
+export CALIB_COLLECTION=$INSTRUMENT/calib/DM-45877,$INSTRUMENT/calib/DM-45877/unbounded
+export RAW_COLLECTION=$INSTRUMENT/raw/all
+export MANUALDEFECTS_RUN=$INSTRUMENT/calib/DM-47365/addManualDefects/manualDefects.20241121c/run
+pipetask run -b /repo/embargo_old \
+    -j 4 \
+    -i $FLAT_BOOTSTRAP_RUN,$DARK_BOOTSTRAP_RUN,$BIAS_BOOTSTRAP_RUN,$RAW_COLLECTION,$CALIB_COLLECTION,$MANUALDEFECTS_RUN \
+    -o $INSTRUMENT/calib/DM-47365/addManualDefects/defectsGen.20241121c/run \
+    -p cp_pipe/pipelines/LSSTComCam/cpDefects.yaml \
+    -d "instrument='LSSTComCam'"
+'''