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Add AlphaFold workflow code#35

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ajtritt wants to merge 40 commits intomainlbl-cbg/t5-commons:mainfrom enh/alphafoldlbl-cbg/t5-commons:enh/alphafoldCopy head branch name to clipboard

+984-32

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Commits on Feb 27, 2025

• Start AlphaFold workflow code

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  5b1e17b

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• Merge branch 'main' into enh/alphafold

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  632d68e

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• Add readme

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  5d65d69

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• Update imports

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• Remove underscore in name

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Commits on Feb 28, 2025

• Update after removing docval

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  5f2f01d

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• Fix command name

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  75b5bfb

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• Workout job sumission

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  f711aac

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Commits on Mar 1, 2025

• Fix GPU flags

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  b31265b

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Commits on Mar 4, 2025

• Add template for AF results

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• Fix comment payload

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  8b1f252

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• A couple things

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• Add script for building environment needed to run AlphaFold with this package

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  7ef6652

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• Update README

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Commits on Mar 5, 2025

• Fix config schema

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• Make directory if does not exist

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Commits on Mar 6, 2025

• Add subpackge for dealing with JAMO

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  059d9d5

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• Make something not required

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  ed9ebe6

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• Add helper class for building asset payloads

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• Add logging and fix environment variable

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  0cdd0b5

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• Finish publishing script

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• Return template data

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• import to top level

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• remove print statement

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• Add ability to set logger name

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  9226c4e

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• Add publishing command to project

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  1658733

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• Workout kinks

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  c01ae0a

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• update Jamo configs

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  60ae2ff

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• Work out kinks in template

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  1587fde

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• Add command to check job database

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  861b0d5

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• work out kinks

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  b085d27

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• Add JAMO to environment setup

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Commits on Mar 7, 2025

• Add class for interacting with JAMO service

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• Add class for interacting with JAMO

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  0af1a52

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• Add ability to add link to comment

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  76dc08d

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• Work out final kinks

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  4e70fde

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• Work out kinks

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Commits on Mar 8, 2025

• Merge branch 'enh/wf' into enh/alphafold

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  2aeed9e

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• Merge branch 'main' into enh/alphafold

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  bfe74d9

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• Update test to include job directory in config

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