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Scripts and Jupyter Notebooks for Joost, Annusver et al. 2020 (Cell Stem Cell)

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Joost_et_al_0a_analysis.ipynb
Joost_et_al_0a_analysis.ipynb
 
 
Joost_et_al_0b_analysis.ipynb
Joost_et_al_0b_analysis.ipynb
 
 
Joost_et_al_10_validation_dataset_visualization.ipynb
Joost_et_al_10_validation_dataset_visualization.ipynb
 
 
Joost_et_al_1_1st_level_clustering.ipynb
Joost_et_al_1_1st_level_clustering.ipynb
 
 
Joost_et_al_2_2nd_level_clustering_permanent_epidermis.ipynb
Joost_et_al_2_2nd_level_clustering_permanent_epidermis.ipynb
 
 
Joost_et_al_3_2nd_level_clustering_anagen_HF1.ipynb
Joost_et_al_3_2nd_level_clustering_anagen_HF1.ipynb
 
 
Joost_et_al_4_2nd_level_clustering_anagen_HF2.ipynb
Joost_et_al_4_2nd_level_clustering_anagen_HF2.ipynb
 
 
Joost_et_al_5_2nd_level_clustering_anagen_HF3.ipynb
Joost_et_al_5_2nd_level_clustering_anagen_HF3.ipynb
 
 
Joost_et_al_6_2nd_level_clustering_fibroblasts.ipynb
Joost_et_al_6_2nd_level_clustering_fibroblasts.ipynb
 
 
Joost_et_al_7_2nd_level_clustering_stroma.ipynb
Joost_et_al_7_2nd_level_clustering_stroma.ipynb
 
 
Joost_et_al_8_receptor_ligand_interactions.ipynb
Joost_et_al_8_receptor_ligand_interactions.ipynb
 
 
Joost_et_al_9_validation_dataset_analysis.ipynb
Joost_et_al_9_validation_dataset_analysis.ipynb
 
 
README.md
README.md
 
 
Skin10X_affinity_propagation_v1_4.py
Skin10X_affinity_propagation_v1_4.py
 
 
Skin10X_mann_whitney_u_v1_3.py
Skin10X_mann_whitney_u_v1_3.py
 
 
Skin10X_misc_scripts_v1_4.py
Skin10X_misc_scripts_v1_4.py
 
 
Skin10X_plot_v1_0.py
Skin10X_plot_v1_0.py
 
 
Skin10X_pseudotemporal_ordering_v1_3.py
Skin10X_pseudotemporal_ordering_v1_3.py
 
 
cell_types_cluster_names.txt
cell_types_cluster_names.txt
 
 
celltypes_1st_level.txt
celltypes_1st_level.txt
 
 
celltypes_2nd_level.txt
celltypes_2nd_level.txt
 
 
celltypes_validation_1st_level_logit.txt
celltypes_validation_1st_level_logit.txt
 
 
celltypes_validation_2nd_level_logit.txt
celltypes_validation_2nd_level_logit.txt
 
 

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Joost_et_al_2020_Cell_Stem_Cell

Scripts and Jupyter Notebooks for Joost, Annusver et al. 2020 (Cell Stem Cell)

Please note that due to Github size constraints, the main analysis workflow has been divided into two jupyter notebooks.

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Scripts and Jupyter Notebooks for Joost, Annusver et al. 2020 (Cell Stem Cell)

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