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Predicted layer has different pixel size than input data #36

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haesleinhuepf opened this issue Dec 15, 2022 · 3 comments
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Predicted layer has different pixel size than input data #36

haesleinhuepf opened this issue Dec 15, 2022 · 3 comments
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@haesleinhuepf
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haesleinhuepf commented Dec 15, 2022 •
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After training, when predicting a new image, the new layer added to napari has pixel size [1,1]. If the original input data had a different pixel size, the images do not fit to each other.

Workaround: In the console of napari, you can transfer the pixel size of one layer to another like this

viewer.layers[-1].scale = viewer.layers[0].scale

CC @thawn
@jdeschamps
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Thanks for the feedback!

I will tackle all the outstanding issues after the holiday season. :)

@haesleinhuepf
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No hurry and Merry Christmas! 🎄😃

@jdeschamps jdeschamps added the bug Something isn't working label Jan 24, 2023
jdeschamps added a commit that referenced this issue Jan 24, 2023
@jdeschamps
Fix #36: predicted layer pixel size
9d26f84
@jdeschamps
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jdeschamps commented Jan 24, 2023 •
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Happy new year then ^^

This should be fixed in 9d26f84 and 8558530.

We plan to merge those in a new release next week.

@jdeschamps jdeschamps mentioned this issue Jan 24, 2023
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jdeschamps added a commit that referenced this issue Jan 25, 2023
@jdeschamps
Merge pull request #40 from juglab/better_bioimageio
aca0b8f 
Merge fixes:
- #32
- #33 
- #34 
- #35
- #36
- Export and load TF SavedModel bundle
- Better bioimage.io format export and import
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@jdeschamps @haesleinhuepf