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Include base parameters in json file for testing
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| { | ||
| "sim_prefix": "default", | ||
| "tstop": 250.0, | ||
| "N_pyr_x": 1, | ||
| "N_pyr_y": 1, | ||
| "L2Basket_Gauss_A_weight": 0.0, | ||
| "L2Basket_Gauss_mu": 2000.0, | ||
| "L2Basket_Gauss_sigma": 3.6, | ||
| "L2Basket_Pois_A_weight_ampa": 0.0, | ||
| "L2Basket_Pois_A_weight_nmda": 0.0, | ||
| "L2Basket_Pois_lamtha": 0.0, | ||
| "L2Pyr_Gauss_A_weight": 0.0, | ||
| "L2Pyr_Gauss_mu": 2000.0, | ||
| "L2Pyr_Gauss_sigma": 3.6, | ||
| "L2Pyr_Pois_A_weight_ampa": 0.0, | ||
| "L2Pyr_Pois_A_weight_nmda": 0.0, | ||
| "L2Pyr_Pois_lamtha": 0.0, | ||
| "L5Pyr_Gauss_A_weight": 0.0, | ||
| "L5Pyr_Gauss_mu": 2000.0, | ||
| "L5Pyr_Gauss_sigma": 4.8, | ||
| "L5Pyr_Pois_A_weight_ampa": 0.0, | ||
| "L5Pyr_Pois_A_weight_nmda": 0.0, | ||
| "L5Pyr_Pois_lamtha": 0.0, | ||
| "L5Basket_Gauss_A_weight": 0.0, | ||
| "L5Basket_Gauss_mu": 2000.0, | ||
| "L5Basket_Gauss_sigma": 2.0, | ||
| "L5Basket_Pois_A_weight_ampa": 0.0, | ||
| "L5Basket_Pois_A_weight_nmda": 0.0, | ||
| "L5Basket_Pois_lamtha": 0.0, | ||
| "gbar_L2Pyr_L2Pyr_ampa": 0.0, | ||
| "gbar_L2Pyr_L2Pyr_nmda": 0.0, | ||
| "gbar_L2Basket_L2Pyr_gabaa": 0.0, | ||
| "gbar_L2Basket_L2Pyr_gabab": 0.0, | ||
| "gbar_L2Pyr_L2Basket": 0.0, | ||
| "gbar_L2Basket_L2Basket": 0.0, | ||
| "gbar_L5Pyr_L5Pyr_ampa": 0.0, | ||
| "gbar_L5Pyr_L5Pyr_nmda": 0.0, | ||
| "gbar_L2Pyr_L5Pyr": 0.0, | ||
| "gbar_L2Basket_L5Pyr": 0.0, | ||
| "gbar_L5Basket_L5Pyr_gabaa": 0.0, | ||
| "gbar_L5Basket_L5Pyr_gabab": 0.0, | ||
| "gbar_L5Basket_L5Basket": 0.0, | ||
| "gbar_L5Pyr_L5Basket": 0.0, | ||
| "gbar_L2Pyr_L5Basket": 0.0, | ||
| "distribution_prox": "normal", | ||
| "t0_input_prox": 1000.0, | ||
| "tstop_input_prox": 250.0, | ||
| "f_input_prox": 10.0, | ||
| "f_stdev_prox": 20.0, | ||
| "events_per_cycle_prox": 2, | ||
| "repeats_prox": 10, | ||
| "t0_input_stdev_prox": 0.0, | ||
| "distribution_dist": "normal", | ||
| "t0_input_dist": 1000.0, | ||
| "tstop_input_dist": 250.0, | ||
| "f_input_dist": 10.0, | ||
| "f_stdev_dist": 20.0, | ||
| "events_per_cycle_dist": 2, | ||
| "repeats_dist": 10, | ||
| "t0_input_stdev_dist": 0.0, | ||
| "input_prox_A_weight_L2Pyr_ampa": 0.0, | ||
| "input_prox_A_weight_L2Pyr_nmda": 0.0, | ||
| "input_prox_A_weight_L5Pyr_ampa": 0.0, | ||
| "input_prox_A_weight_L5Pyr_nmda": 0.0, | ||
| "input_prox_A_weight_L2Basket_ampa": 0.0, | ||
| "input_prox_A_weight_L2Basket_nmda": 0.0, | ||
| "input_prox_A_weight_L5Basket_ampa": 0.0, | ||
| "input_prox_A_weight_L5Basket_nmda": 0.0, | ||
| "input_prox_A_delay_L2": 0.1, | ||
| "input_prox_A_delay_L5": 1.0, | ||
| "input_dist_A_weight_L2Pyr_ampa": 0.0, | ||
| "input_dist_A_weight_L2Pyr_nmda": 0.0, | ||
| "input_dist_A_weight_L5Pyr_ampa": 0.0, | ||
| "input_dist_A_weight_L5Pyr_nmda": 0.0, | ||
| "input_dist_A_weight_L2Basket_ampa": 0.0, | ||
| "input_dist_A_weight_L2Basket_nmda": 0.0, | ||
| "input_dist_A_delay_L2": 5.0, | ||
| "input_dist_A_delay_L5": 5.0, | ||
| "dt_evprox0_evdist": -1, | ||
| "dt_evprox0_evprox1": -1, | ||
| "sync_evinput": 1, | ||
| "inc_evinput": 0.0, | ||
| "save_spec_data": 0, | ||
| "f_max_spec": 40.0, | ||
| "dipole_scalefctr": 30000.0, | ||
| "dipole_smooth_win": 15.0, | ||
| "save_figs": 0, | ||
| "save_vsoma": 0, | ||
| "save_dpl": 0, | ||
| "Itonic_A_L2Pyr_soma": 0.0, | ||
| "Itonic_t0_L2Pyr_soma": 0.0, | ||
| "Itonic_T_L2Pyr_soma": -1.0, | ||
| "Itonic_A_L2Basket": 0.0, | ||
| "Itonic_t0_L2Basket": 0.0, | ||
| "Itonic_T_L2Basket": -1.0, | ||
| "Itonic_A_L5Pyr_soma": 0.0, | ||
| "Itonic_t0_L5Pyr_soma": 0.0, | ||
| "Itonic_T_L5Pyr_soma": -1.0, | ||
| "Itonic_A_L5Basket": 0.0, | ||
| "Itonic_t0_L5Basket": 0.0, | ||
| "Itonic_T_L5Basket": -1.0, | ||
| "N_trials": 1, | ||
| "prng_seedcore_input_prox": 0, | ||
| "prng_seedcore_input_dist": 0, | ||
| "prng_seedcore_extpois": 0, | ||
| "prng_seedcore_extgauss": 0, | ||
| "t0_pois": 0.0, | ||
| "T_pois": -1, | ||
| "dt": 0.025, | ||
| "celsius": 37.0, | ||
| "threshold": 0.0, | ||
| "L2Pyr_soma_L": 22.1, | ||
| "L2Pyr_soma_diam": 23.4, | ||
| "L2Pyr_soma_cm": 0.6195, | ||
| "L2Pyr_soma_Ra": 200.0, | ||
| "L2Pyr_dend_cm": 0.6195, | ||
| "L2Pyr_dend_Ra": 200.0, | ||
| "L2Pyr_apicaltrunk_L": 59.5, | ||
| "L2Pyr_apicaltrunk_diam": 4.25, | ||
| "L2Pyr_apical1_L": 306.0, | ||
| "L2Pyr_apical1_diam": 4.08, | ||
| "L2Pyr_apicaltuft_L": 238.0, | ||
| "L2Pyr_apicaltuft_diam": 3.4, | ||
| "L2Pyr_apicaloblique_L": 340.0, | ||
| "L2Pyr_apicaloblique_diam": 3.91, | ||
| "L2Pyr_basal1_L": 85.0, | ||
| "L2Pyr_basal1_diam": 4.25, | ||
| "L2Pyr_basal2_L": 255.0, | ||
| "L2Pyr_basal2_diam": 2.72, | ||
| "L2Pyr_basal3_L": 255.0, | ||
| "L2Pyr_basal3_diam": 2.72, | ||
| "L2Pyr_ampa_e": 0.0, | ||
| "L2Pyr_ampa_tau1": 0.5, | ||
| "L2Pyr_ampa_tau2": 5.0, | ||
| "L2Pyr_nmda_e": 0.0, | ||
| "L2Pyr_nmda_tau1": 1.0, | ||
| "L2Pyr_nmda_tau2": 20.0, | ||
| "L2Pyr_gabaa_e": -80.0, | ||
| "L2Pyr_gabaa_tau1": 0.5, | ||
| "L2Pyr_gabaa_tau2": 5.0, | ||
| "L2Pyr_gabab_e": -80.0, | ||
| "L2Pyr_gabab_tau1": 1.0, | ||
| "L2Pyr_gabab_tau2": 20.0, | ||
| "L2Pyr_soma_gkbar_hh2": 0.01, | ||
| "L2Pyr_soma_gnabar_hh2": 0.18, | ||
| "L2Pyr_soma_el_hh2": -65.0, | ||
| "L2Pyr_soma_gl_hh2": 4.26e-05, | ||
| "L2Pyr_soma_gbar_km": 250.0, | ||
| "L2Pyr_dend_gkbar_hh2": 0.01, | ||
| "L2Pyr_dend_gnabar_hh2": 0.15, | ||
| "L2Pyr_dend_el_hh2": -65.0, | ||
| "L2Pyr_dend_gl_hh2": 4.26e-05, | ||
| "L2Pyr_dend_gbar_km": 250.0, | ||
| "L5Pyr_soma_L": 39.0, | ||
| "L5Pyr_soma_diam": 28.9, | ||
| "L5Pyr_soma_cm": 0.85, | ||
| "L5Pyr_soma_Ra": 200.0, | ||
| "L5Pyr_dend_cm": 0.85, | ||
| "L5Pyr_dend_Ra": 200.0, | ||
| "L5Pyr_apicaltrunk_L": 102.0, | ||
| "L5Pyr_apicaltrunk_diam": 10.2, | ||
| "L5Pyr_apical1_L": 680.0, | ||
| "L5Pyr_apical1_diam": 7.48, | ||
| "L5Pyr_apical2_L": 680.0, | ||
| "L5Pyr_apical2_diam": 4.93, | ||
| "L5Pyr_apicaltuft_L": 425.0, | ||
| "L5Pyr_apicaltuft_diam": 3.4, | ||
| "L5Pyr_apicaloblique_L": 255.0, | ||
| "L5Pyr_apicaloblique_diam": 5.1, | ||
| "L5Pyr_basal1_L": 85.0, | ||
| "L5Pyr_basal1_diam": 6.8, | ||
| "L5Pyr_basal2_L": 255.0, | ||
| "L5Pyr_basal2_diam": 8.5, | ||
| "L5Pyr_basal3_L": 255.0, | ||
| "L5Pyr_basal3_diam": 8.5, | ||
| "L5Pyr_ampa_e": 0.0, | ||
| "L5Pyr_ampa_tau1": 0.5, | ||
| "L5Pyr_ampa_tau2": 5.0, | ||
| "L5Pyr_nmda_e": 0.0, | ||
| "L5Pyr_nmda_tau1": 1.0, | ||
| "L5Pyr_nmda_tau2": 20.0, | ||
| "L5Pyr_gabaa_e": -80.0, | ||
| "L5Pyr_gabaa_tau1": 0.5, | ||
| "L5Pyr_gabaa_tau2": 5.0, | ||
| "L5Pyr_gabab_e": -80.0, | ||
| "L5Pyr_gabab_tau1": 1.0, | ||
| "L5Pyr_gabab_tau2": 20.0, | ||
| "L5Pyr_soma_gkbar_hh2": 0.01, | ||
| "L5Pyr_soma_gnabar_hh2": 0.16, | ||
| "L5Pyr_soma_el_hh2": -65.0, | ||
| "L5Pyr_soma_gl_hh2": 4.26e-05, | ||
| "L5Pyr_soma_gbar_ca": 60.0, | ||
| "L5Pyr_soma_taur_cad": 20.0, | ||
| "L5Pyr_soma_gbar_kca": 0.0002, | ||
| "L5Pyr_soma_gbar_km": 200.0, | ||
| "L5Pyr_soma_gbar_cat": 0.0002, | ||
| "L5Pyr_soma_gbar_ar": 1e-06, | ||
| "L5Pyr_dend_gkbar_hh2": 0.01, | ||
| "L5Pyr_dend_gnabar_hh2": 0.14, | ||
| "L5Pyr_dend_el_hh2": -71.0, | ||
| "L5Pyr_dend_gl_hh2": 4.26e-05, | ||
| "L5Pyr_dend_gbar_ca": 60.0, | ||
| "L5Pyr_dend_taur_cad": 20.0, | ||
| "L5Pyr_dend_gbar_kca": 0.0002, | ||
| "L5Pyr_dend_gbar_km": 200.0, | ||
| "L5Pyr_dend_gbar_cat": 0.0002, | ||
| "L5Pyr_dend_gbar_ar": 1e-06 | ||
| } |